Literature DB >> 18789754

SNOMED reaching its adolescence: ontologists' and logicians' health check.

Stefan Schulz1, Boontawee Suntisrivaraporn, Franz Baader, Martin Boeker.   

Abstract

After a critical review of the present architecture of SNOMED CT, addressing both logical and ontological issues, we present a roadmap toward an overall improvement and recommend the following actions: SNOMED CT's ontology, dictionary, and information model components should be kept separate. SNOMED CT's upper level should be re-arranged according to a standard upper level ontology. SNOMED CT concepts should be assigned to the four disjoint groups: classes, instances, relations, and meta-classes. SNOMED CT's binary relations should be reduced to a set of canonical ones, following existing recommendations. Taxonomies should be cleansed and split into disjoint partitions. The number of full definitions should be increased. Finally, new approaches are proposed for modeling part-whole hierarchies, as well as the integration of qualifier relations into a unified framework. All proposed modifications can be expressed by the computationally tractable description logic EL(++).

Mesh:

Year:  2008        PMID: 18789754     DOI: 10.1016/j.ijmedinf.2008.06.004

Source DB:  PubMed          Journal:  Int J Med Inform        ISSN: 1386-5056            Impact factor:   4.046


  18 in total

1.  Ontological realism: A methodology for coordinated evolution of scientific ontologies.

Authors:  Barry Smith; Werner Ceusters
Journal:  Appl Ontol       Date:  2010-11-15       Impact factor: 1.115

2.  Usability-driven pruning of large ontologies: the case of SNOMED CT.

Authors:  Pablo López-García; Martin Boeker; Arantza Illarramendi; Stefan Schulz
Journal:  J Am Med Inform Assoc       Date:  2012-01-19       Impact factor: 4.497

3.  Getting the foot out of the pelvis: modeling problems affecting use of SNOMED CT hierarchies in practical applications.

Authors:  Alan L Rector; Sam Brandt; Thomas Schneider
Journal:  J Am Med Inform Assoc       Date:  2011-04-21       Impact factor: 4.497

4.  A common layer of interoperability for biomedical ontologies based on OWL EL.

Authors:  Robert Hoehndorf; Michel Dumontier; Anika Oellrich; Sarala Wimalaratne; Dietrich Rebholz-Schuhmann; Paul Schofield; Georgios V Gkoutos
Journal:  Bioinformatics       Date:  2011-02-21       Impact factor: 6.937

5.  A survey of SNOMED CT direct users, 2010: impressions and preferences regarding content and quality.

Authors:  Gai Elhanan; Yehoshua Perl; James Geller
Journal:  J Am Med Inform Assoc       Date:  2011-08-11       Impact factor: 4.497

6.  Assisting the translation of SNOMED CT into French using UMLS and four representative French-language terminologies.

Authors:  Michel Joubert; Hocine Abdoune; Tayeb Merabti; Stéfan Darmoni; Marius Fieschi
Journal:  AMIA Annu Symp Proc       Date:  2009-11-14

7.  A tribal abstraction network for SNOMED CT target hierarchies without attribute relationships.

Authors:  Christopher Ochs; James Geller; Yehoshua Perl; Yan Chen; Ankur Agrawal; James T Case; George Hripcsak
Journal:  J Am Med Inform Assoc       Date:  2014-10-20       Impact factor: 4.497

8.  Scalable quality assurance for large SNOMED CT hierarchies using subject-based subtaxonomies.

Authors:  Christopher Ochs; James Geller; Yehoshua Perl; Yan Chen; Junchuan Xu; Hua Min; James T Case; Zhi Wei
Journal:  J Am Med Inform Assoc       Date:  2014-10-21       Impact factor: 4.497

9.  Computerized Approach to Creating a Systematic Ontology of Hematology/Oncology Regimens.

Authors:  Andrew M Malty; Sandeep K Jain; Peter C Yang; Krysten Harvey; Jeremy L Warner
Journal:  JCO Clin Cancer Inform       Date:  2018-05-11

Review 10.  Computational tools for comparative phenomics: the role and promise of ontologies.

Authors:  Georgios V Gkoutos; Paul N Schofield; Robert Hoehndorf
Journal:  Mamm Genome       Date:  2012-07-20       Impact factor: 2.957

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