Literature DB >> 18786545

The capsid of the small RNA phage PRR1 is stabilized by metal ions.

Magnus Persson1, Kaspars Tars, Lars Liljas.   

Abstract

Many nonenveloped virus particles are stabilized by calcium ions bound in the interfaces between the protein subunits. These ions may have a role in the disassembly process. The small RNA phages of the Leviviridae family have T=3 quasi-symmetry and are unique among simple viruses in that they have a coat protein with a translational repressor activity and a fold that has not been observed in other viruses. The crystal structure of phage PRR1 has been determined to 3.5 A resolution. The structure shows a tentative binding site for a calcium ion close to the quasi-3-fold axis. The RNA-binding surface used for repressor activity is mostly conserved. The structure does not show any significant differences between quasi-equivalent subunits, which suggests that the assembly is not controlled by conformational switches as in many other simple viruses.

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Year:  2008        PMID: 18786545     DOI: 10.1016/j.jmb.2008.08.060

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  8 in total

1.  Lessons from high-throughput protein crystallization screening: 10 years of practical experience.

Authors:  Joseph R Luft; Edward H Snell; George T Detitta
Journal:  Expert Opin Drug Discov       Date:  2011-03-22       Impact factor: 6.098

2.  Three-dimensional structure of 22 uncultured ssRNA bacteriophages: Flexibility of the coat protein fold and variations in particle shapes.

Authors:  Jānis Rūmnieks; Ilva Liekniņa; Gints Kalniņš; Mihails Šišovs; Ināra Akopjana; Jānis Bogans; Kaspars Tārs
Journal:  Sci Adv       Date:  2020-09-02       Impact factor: 14.136

3.  A Pilin Region Affecting Host Range of the Pseudomonas aeruginosa RNA Phage, PP7.

Authors:  Eun Sook Kim; Hee-Won Bae; You-Hee Cho
Journal:  Front Microbiol       Date:  2018-02-16       Impact factor: 5.640

4.  Diversity of pili-specific bacteriophages: genome sequence of IncM plasmid-dependent RNA phage M.

Authors:  Janis Rumnieks; Kaspars Tars
Journal:  BMC Microbiol       Date:  2012-11-24       Impact factor: 3.605

5.  Virus capsid dissolution studied by microsecond molecular dynamics simulations.

Authors:  Daniel S D Larsson; Lars Liljas; David van der Spoel
Journal:  PLoS Comput Biol       Date:  2012-05-10       Impact factor: 4.475

Review 6.  Physical virology: From virus self-assembly to particle mechanics.

Authors:  Pedro Buzón; Sourav Maity; Wouter H Roos
Journal:  Wiley Interdiscip Rev Nanomed Nanobiotechnol       Date:  2020-01-20

7.  Biophysical properties of single rotavirus particles account for the functions of protein shells in a multilayered virus.

Authors:  Manuel Jiménez-Zaragoza; Marina Pl Yubero; Esther Martín-Forero; Jose R Castón; David Reguera; Daniel Luque; Pedro J de Pablo; Javier M Rodríguez
Journal:  Elife       Date:  2018-09-11       Impact factor: 8.140

Review 8.  Construction and characterization of virus-like particles: a review.

Authors:  Andris Zeltins
Journal:  Mol Biotechnol       Date:  2013-01       Impact factor: 2.695

  8 in total

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