Literature DB >> 18781397

A rapid and hazardous reagent free protocol for genomic DNA extraction suitable for genetic studies in plants.

Simeon O Kotchoni1, Emma W Gachomo.   

Abstract

Protocols for genomic DNA extraction from plants are generally lengthy, since they require that tissues be ground in liquid nitrogen, followed by a precipitation step, washing and drying of the DNA pellet, etc. This represents a major challenge especially when several hundred samples must be screened/analyzed within a working day. There is therefore a need for a rapid and simple procedure, which will produce DNA quality suitable for various analyses. Here, we describe a time and cost efficient protocol for genomic DNA isolation from plants suitable for all routine genetic screening/analyses. The protocol is free from hazardous reagents and therefore safe to be executed by non-specialists. With this protocol more than 100 genomic DNA samples could manually be extracted within a working day, making it a promising alternative in genetic studies of large-scale genomic screening projects.

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Year:  2008        PMID: 18781397     DOI: 10.1007/s11033-008-9362-9

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  8 in total

1.  Extraction of PCR-quality plant and microbial DNA from total rumen contents.

Authors:  Ranjana Sharma; S Jacob John; M Damgaard; Tim A McAllister
Journal:  Biotechniques       Date:  2003-01       Impact factor: 1.993

2.  A simple and rapid method for the preparation of plant genomic DNA for PCR analysis.

Authors:  K Edwards; C Johnstone; C Thompson
Journal:  Nucleic Acids Res       Date:  1991-03-25       Impact factor: 16.971

3.  A powerful new technique to quickly prepare hundreds of plant extracts for PCR and RAPD analyses.

Authors:  F Guidet
Journal:  Nucleic Acids Res       Date:  1994-05-11       Impact factor: 16.971

4.  Rapid identification of Triticeae genotypes from single seeds using the polymerase chain reaction.

Authors:  C Benito; A M Figueiras; C Zaragoza; F J Gallego; A de la Peña
Journal:  Plant Mol Biol       Date:  1993-01       Impact factor: 4.076

5.  Ribosomal DNA spacer-length polymorphisms in barley: mendelian inheritance, chromosomal location, and population dynamics.

Authors:  M A Saghai-Maroof; K M Soliman; R A Jorgensen; R W Allard
Journal:  Proc Natl Acad Sci U S A       Date:  1984-12       Impact factor: 11.205

6.  Rapid isolation of high molecular weight plant DNA.

Authors:  M G Murray; W F Thompson
Journal:  Nucleic Acids Res       Date:  1980-10-10       Impact factor: 16.971

7.  A quick and inexpensive method for removing polysaccharides from plant genomic DNA.

Authors:  G Fang; S Hammar; R Grumet
Journal:  Biotechniques       Date:  1992-07       Impact factor: 1.993

8.  Preparation of high molecular weight genomic DNA from nuclei of woody plants.

Authors:  F Luro; F Laigret
Journal:  Biotechniques       Date:  1995-09       Impact factor: 1.993

  8 in total
  3 in total

1.  A plant cocktail amenable for PCR-based genetic analysis in Arabidopsis thaliana.

Authors:  Simeon O Kotchoni; Emma W Gachomo; Jose C Jimenez-Lopez
Journal:  Mol Biol Rep       Date:  2011-01-18       Impact factor: 2.316

2.  A simplified arthropod genomic-DNA extraction protocol for polymerase chain reaction (PCR)-based specimen identification through barcoding.

Authors:  Venu M Margam; Emma W Gachomo; John H Shukle; Oluwole O Ariyo; Manfredo J Seufferheld; Simeon O Kotchoni
Journal:  Mol Biol Rep       Date:  2010-03-04       Impact factor: 2.316

3.  A simple and effective method to obtain high DNA quality and quantity from Cerrado plant species.

Authors:  Diego Cerveira de Souza; Terezinha Aparecida Teixeira
Journal:  Mol Biol Rep       Date:  2019-05-09       Impact factor: 2.316

  3 in total

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