Literature DB >> 18775969

Utility of multilocus genotypes for taxon assignment in stands of closely related European white oaks from Switzerland.

Felix Gugerli1, Sabine Brodbeck, Rolf Holderegger.   

Abstract

BACKGROUND AND AIMS: European white oaks (Quercus petraea, Q. pubescens, Q. robur) have long puzzled plant biologists owing to disputed species differentiation. Extensive hybridization or shared ancestry have been proposed as alternative hypotheses to explain why genetic differentiation between these oak species is low. Species delimitation is usually weak and often shows gradual transitions in leaf morphology. Hence, individual identification may be difficult, but remains a critical step for both scientific work and practical management.
METHODS: Multilocus genotype data (five nuclear microsatellites) were used from ten Swiss oak stands for taxon identification without a priori grouping of individuals or populations, using model-based Bayesian assignment tests. KEY
RESULTS: Three groups best structured the data, indicating that the taxonomical signal was stronger than the spatial signal. Most individuals showed high posterior probabilities for either of three genetic groups that were best circumscribed as taxonomical units. The assignment of a subset of trees, whose taxonomic status had been previously characterized in detail, supported this classification scheme.
CONCLUSIONS: Molecular-genetic assignment tests are useful in the identification of species status in critical taxon complexes such as the European white oaks. Such an approach is of practical importance for forest management, e.g. for stand certification or in seed trade to trace the origin of forest products.

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Year:  2008        PMID: 18775969      PMCID: PMC2712387          DOI: 10.1093/aob/mcn164

Source DB:  PubMed          Journal:  Ann Bot        ISSN: 0305-7364            Impact factor:   4.357


  28 in total

1.  Inference of population structure using multilocus genotype data.

Authors:  J K Pritchard; M Stephens; P Donnelly
Journal:  Genetics       Date:  2000-06       Impact factor: 4.562

2.  Species status of hybridizing oaks.

Authors:  G Muir; C C Fleming; C Schlötterer
Journal:  Nature       Date:  2000-06-29       Impact factor: 49.962

3.  Empirical evaluation of genetic clustering methods using multilocus genotypes from 20 chicken breeds.

Authors:  N A Rosenberg; T Burke; K Elo; M W Feldman; P J Freidlin; M A Groenen; J Hillel; A Mäki-Tanila; M Tixier-Boichard; A Vignal; K Wimmers; S Weigend
Journal:  Genetics       Date:  2001-10       Impact factor: 4.562

4.  Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies.

Authors:  Daniel Falush; Matthew Stephens; Jonathan K Pritchard
Journal:  Genetics       Date:  2003-08       Impact factor: 4.562

5.  Moving beyond single-locus studies to characterize hybridization between oaks (Quercus spp.).

Authors:  Graham Muir; Christian Schlötterer
Journal:  Mol Ecol       Date:  2006-07       Impact factor: 6.185

6.  Assignment methods: matching biological questions with appropriate techniques.

Authors:  Stephanie Manel; Oscar E Gaggiotti; Robin S Waples
Journal:  Trends Ecol Evol       Date:  2005-01-06       Impact factor: 17.712

7.  Genetic signatures of interpopulation dispersal.

Authors:  P M Waser; C Strobeck
Journal:  Trends Ecol Evol       Date:  1998-02-01       Impact factor: 17.712

8.  Differentiation and hybridization between Quercus crispula and Q. dentata (Fagaceae): insights from morphological traits, amplified fragment length polymorphism markers, and leafminer composition.

Authors:  Takahide A Ishida; Kouhei Hattori; Hiroaki Sato; Masahito T Kimura
Journal:  Am J Bot       Date:  2003-05       Impact factor: 3.844

9.  Natural hybridization and hybrid zones between Quercus crassifolia and Quercus crassipes (Fagaceae) in Mexico: morphological and molecular evidence.

Authors:  Efraín Tovar-Sánchez; Ken Oyama
Journal:  Am J Bot       Date:  2004-09       Impact factor: 3.844

10.  Landscape-level gene flow in Lobaria pulmonaria, an epiphytic lichen.

Authors:  Silke Werth; Felix Gugerli; Rolf Holderegger; Helene H Wagner; Daniela Csencsics; Christoph Scheidegger
Journal:  Mol Ecol       Date:  2007-07       Impact factor: 6.185

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  4 in total

1.  Interspecific gene flow in a multispecies oak hybrid zone in the Sierra Tarahumara of Mexico.

Authors:  Juan Manuel Peñaloza-Ramírez; Antonio González-Rodríguez; Luis Mendoza-Cuenca; Henri Caron; Antoine Kremer; Ken Oyama
Journal:  Ann Bot       Date:  2010-01-06       Impact factor: 4.357

2.  A species-discriminatory single-nucleotide polymorphism set reveals maintenance of species integrity in hybridizing European white oaks (Quercus spp.) despite high levels of admixture.

Authors:  Oliver Reutimann; Felix Gugerli; Christian Rellstab
Journal:  Ann Bot       Date:  2020-03-29       Impact factor: 4.357

3.  Exploring species limits in two closely related Chinese oaks.

Authors:  Yan-Fei Zeng; Wan-Jin Liao; Rémy J Petit; Da-Yong Zhang
Journal:  PLoS One       Date:  2010-11-30       Impact factor: 3.240

Review 4.  Multiomics Molecular Research into the Recalcitrant and Orphan Quercus ilex Tree Species: Why, What for, and How.

Authors:  Ana María Maldonado-Alconada; María Ángeles Castillejo; María-Dolores Rey; Mónica Labella-Ortega; Marta Tienda-Parrilla; Tamara Hernández-Lao; Irene Honrubia-Gómez; Javier Ramírez-García; Víctor M Guerrero-Sanchez; Cristina López-Hidalgo; Luis Valledor; Rafael M Navarro-Cerrillo; Jesús V Jorrin-Novo
Journal:  Int J Mol Sci       Date:  2022-09-01       Impact factor: 6.208

  4 in total

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