Literature DB >> 18775959

The effect of temperature on mechanical resistance of the native and intermediate states of I27.

Yukinori Taniguchi1, David J Brockwell, Masaru Kawakami.   

Abstract

We investigated the effect of temperature on the mechanical unfolding of I27 from human cardiac titin, employing a custom-built temperature control device for single-molecule atomic force microscopy measurement. A sawtooth pattern was observed in the force curves where each force peak reports on the unfolding of an I27 domain. In early unfolding events, we observed a "hump-like" deviation due to the detachment of beta-strand A from each I27 domain. The force at which the humps appear was approximately 130 pN and showed no temperature dependence, at least in the temperature range of 2 degrees C-30 degrees C. The hump structure was successfully analyzed with a two-state worm-like chain model, and the Gibbs free energy difference of the detachment reaction was estimated to be 11.6 +/- 0.58 kcal/mol and found to be temperature independent. By contrast, upon lowering the temperature, the mean unfolding force from the partly unfolded intermediate state was found to markedly increase and the unfolding force distribution to broaden significantly, suggesting that the distance (x(u)) between the folded and transition states in the energy landscape along the pulling direction is decreased. These results suggest that the local structure of beta-strand A are stabilized by topologically simple local hydrogen-bond network and that the temperature does not affect the detachment reaction thermodynamically and kinetically, whereas the interaction between the beta-strands A' and G, which is a critical region for its mechanical stability, is strongly dependent on the temperature.

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Year:  2008        PMID: 18775959      PMCID: PMC2586559          DOI: 10.1529/biophysj.108.141275

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  46 in total

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4.  Hidden complexity in the mechanical properties of titin.

Authors:  Philip M Williams; Susan B Fowler; Robert B Best; José Luis Toca-Herrera; Kathryn A Scott; Annette Steward; Jane Clarke
Journal:  Nature       Date:  2003-03-27       Impact factor: 49.962

5.  The effect of core destabilization on the mechanical resistance of I27.

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6.  Mechanically unfolding proteins: the effect of unfolding history and the supramolecular scaffold.

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Journal:  Protein Sci       Date:  2002-12       Impact factor: 6.725

7.  Mechanical unfolding of a titin Ig domain: structure of transition state revealed by combining atomic force microscopy, protein engineering and molecular dynamics simulations.

Authors:  Robert B Best; Susan B Fowler; José L Toca Herrera; Annette Steward; Emanuele Paci; Jane Clarke
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8.  Pulling geometry defines the mechanical resistance of a beta-sheet protein.

Authors:  David J Brockwell; Emanuele Paci; Rebecca C Zinober; Godfrey S Beddard; Peter D Olmsted; D Alastair Smith; Richard N Perham; Sheena E Radford
Journal:  Nat Struct Biol       Date:  2003-08-17

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Authors:  Robert B Best; Jane Clarke
Journal:  Chem Commun (Camb)       Date:  2002-02-07       Impact factor: 6.222

10.  Mechanical unfolding of a titin Ig domain: structure of unfolding intermediate revealed by combining AFM, molecular dynamics simulations, NMR and protein engineering.

Authors:  Susan B Fowler; Robert B Best; José L Toca Herrera; Trevor J Rutherford; Annette Steward; Emanuele Paci; Martin Karplus; Jane Clarke
Journal:  J Mol Biol       Date:  2002-09-27       Impact factor: 5.469

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  10 in total

1.  Computational investigation of the effect of thermal perturbation on the mechanical unfolding of titin I27.

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Journal:  J Mol Model       Date:  2011-11-27       Impact factor: 1.810

2.  Low folding cooperativity of HP35 revealed by single-molecule force spectroscopy and molecular dynamics simulation.

Authors:  Chunmei Lv; Cheng Tan; Meng Qin; Dawei Zou; Yi Cao; Wei Wang
Journal:  Biophys J       Date:  2012-04-18       Impact factor: 4.033

3.  Dynamics of the coiled-coil unfolding transition of myosin rod probed by dissipation force spectrum.

Authors:  Yukinori Taniguchi; Bhavin S Khatri; David J Brockwell; Emanuele Paci; Masaru Kawakami
Journal:  Biophys J       Date:  2010-07-07       Impact factor: 4.033

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5.  Worm-like Ising model for protein mechanical unfolding under the effect of osmolytes.

Authors:  Daniel Aioanei; Marco Brucale; Isabella Tessari; Luigi Bubacco; Bruno Samorì
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Review 6.  Reconstructing folding energy landscapes by single-molecule force spectroscopy.

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7.  Variation in the mechanical unfolding pathway of p53DBD induced by interaction with p53 N-terminal region or DNA.

Authors:  Yukinori Taniguchi; Masaru Kawakami
Journal:  PLoS One       Date:  2012-11-08       Impact factor: 3.240

Review 8.  Mechanical unfolding studies of protein molecules.

Authors:  Yukinori Taniguchi; Akiko Kobayashi; Masaru Kawakami
Journal:  Biophysics (Nagoya-shi)       Date:  2012-02-17

9.  Hereditary tyrosinemia type I-associated mutations in fumarylacetoacetate hydrolase reduce the enzyme stability and increase its aggregation rate.

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Journal:  J Biol Chem       Date:  2019-07-12       Impact factor: 5.157

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  10 in total

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