Literature DB >> 18773219

The Fox genes of Branchiostoma floridae.

Jr-Kai Yu1, Francoise Mazet, Yen-Ta Chen, Song-Wei Huang, Kuo-Chen Jung, Sebastian M Shimeld.   

Abstract

The Fox genes are united by encoding a fork head domain, a deoxyribonucleic acid (DNA)-binding domain of the winged-helix type that marks these genes as encoding transcription factors. Vertebrate Fox genes are classified into 23 subclasses named from FoxA to FoxS. We have surveyed the genome of the amphioxus Branchiostoma floridae, identifying 32 distinct Fox genes representing 21 of these 23 subclasses. The missing subclasses, FoxR and FoxS, are specific to vertebrates, and in addition, B. floridae has one further group, FoxAB, that is not found in vertebrates. Hence, we conclude B. floridae has maintained a high level of Fox gene diversity. Expressed sequence tag and complementary DNA sequence data support the expression of 23 genes. Several linkages between B. floridae Fox genes were noted, including some that have evolved relatively recently via tandem duplication in the amphioxus lineage and others that are more ancient.

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Year:  2008        PMID： 18773219     DOI： 10.1007/s00427-008-0229-9

Source DB:  PubMed          Journal:  Dev Genes Evol        ISSN： 0949-944X            Impact factor:   0.900


  26 in total

1.  Unified nomenclature for the winged helix/forkhead transcription factors.

Authors:  K H Kaestner; W Knochel; D E Martinez
Journal:  Genes Dev       Date:  2000-01-15       Impact factor: 11.361

2.  AmphiFoxQ2, a novel winged helix/forkhead gene, exclusively marks the anterior end of the amphioxus embryo.

Authors:  Jr-Kai Yu; Nicholas D Holland; Linda Z Holland
Journal:  Dev Genes Evol       Date:  2003-01-30       Impact factor: 0.900

3.  MrBayes 3: Bayesian phylogenetic inference under mixed models.

Authors:  Fredrik Ronquist; John P Huelsenbeck
Journal:  Bioinformatics       Date:  2003-08-12       Impact factor: 6.937

4.  Genomic inventory and expression of Sox and Fox genes in the cnidarian Nematostella vectensis.

Authors:  Craig R Magie; Kevin Pang; Mark Q Martindale
Journal:  Dev Genes Evol       Date:  2005-09-29       Impact factor: 0.900

5.  An ancient Fox gene cluster in bilaterian animals.

Authors:  Françoise Mazet; Chris T Amemiya; Sebastian M Shimeld
Journal:  Curr Biol       Date:  2006-05-09       Impact factor: 10.834

6.  Characterisation of amphioxus HNF-3 genes: conserved expression in the notochord and floor plate.

Authors:  S M Shimeld
Journal:  Dev Biol       Date:  1997-03-01       Impact factor: 3.582

7.  The evolution of chordate neural segmentation.

Authors:  Françoise Mazet; Sebastian M Shimeld
Journal:  Dev Biol       Date:  2002-11-15       Impact factor: 3.582

8.  Formation of the chordamesoderm in the amphioxus embryo: Analysis with Brachyury and fork head/HNF-3 genes.

Authors:  K Terazawa; N Satoh
Journal:  Dev Genes Evol       Date:  1997-05       Impact factor: 0.900

9.  Survey of forkhead domain encoding genes in the Drosophila genome: Classification and embryonic expression patterns.

Authors:  Hsiu-Hsiang Lee; Manfred Frasch
Journal:  Dev Dyn       Date:  2004-02       Impact factor: 3.780

10.  Comparative genomics of vertebrate Fox cluster loci.

Authors:  Karl R Wotton; Sebastian M Shimeld
Journal:  BMC Genomics       Date:  2006-10-24       Impact factor: 3.969
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  22 in total

1.  The amphioxus genome sequence illuminates the evolutionary origin of vertebrates.

Authors:  Jeremy J Gibson-Brown; Volker Hartenstein
Journal:  Dev Genes Evol       Date:  2008-10-24       Impact factor: 0.900

Review 2.  Genome-wide identification and characterization of Fox genes in the silkworm, Bombyx mori.

Authors:  JiangBo Song; ZhiQuan Li; XiaoLing Tong; Cong Chen; Min Chen; Gang Meng; Peng Chen; ChunLin Li; YaQun Xin; TingTing Gai; FangYin Dai; Cheng Lu
Journal:  Funct Integr Genomics       Date:  2015-04-17       Impact factor: 3.410

3.  Divergence of ectodermal and mesodermal gene regulatory network linkages in early development of sea urchins.

Authors:  Eric M Erkenbrack
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-03       Impact factor: 11.205

4.  Genome-wide identification, phylogeny, and gonadal expression of fox genes in Nile tilapia, Oreochromis niloticus.

Authors:  Jing Yuan; Wenjing Tao; Yunying Cheng; Baofeng Huang; Deshou Wang
Journal:  Fish Physiol Biochem       Date:  2014-02-14       Impact factor: 2.794

5.  Ancient homeobox gene loss and the evolution of chordate brain and pharynx development: deductions from amphioxus gene expression.

Authors:  Thomas Butts; Peter W H Holland; David E K Ferrier
Journal:  Proc Biol Sci       Date:  2010-06-16       Impact factor: 5.349

Review 6.  Gene regulatory evolution and the origin of macroevolutionary novelties: insights from the neural crest.

Authors:  Eric Van Otterloo; Robert A Cornell; Daniel Meulemans Medeiros; Aaron T Garnett
Journal:  Genesis       Date:  2013-06-25       Impact factor: 2.487

7.  The genetic factors of bilaterian evolution.

Authors:  Peter Heger; Wen Zheng; Anna Rottmann; Kristen A Panfilio; Thomas Wiehe
Journal:  Elife       Date:  2020-07-16       Impact factor: 8.140

8.  A cDNA resource for the cephalochordate amphioxus Branchiostoma floridae.

Authors:  Jr-Kai Yu; Ming-Chih Wang; Tadasu Shin-I; Yuji Kohara; Linda Z Holland; Noriyuki Satoh; Yutaka Satou
Journal:  Dev Genes Evol       Date:  2008-09-05       Impact factor: 0.900

9.  Sequencing and analysis of the Mediterranean amphioxus (Branchiostoma lanceolatum) transcriptome.

Authors:  Silvan Oulion; Stephanie Bertrand; Mohamed R Belgacem; Yann Le Petillon; Hector Escriva
Journal:  PLoS One       Date:  2012-05-09       Impact factor: 3.240

10.  A Preliminary Single-Cell RNA-Seq Analysis of Embryonic Cells That Express Brachyury in the Amphioxus, Branchiostoma japonicum.

Authors:  Noriyuki Satoh; Hitoshi Tominaga; Masato Kiyomoto; Kanako Hisata; Jun Inoue; Koki Nishitsuji
Journal:  Front Cell Dev Biol       Date:  2021-07-15
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