Literature DB >> 18765902

Structure of the catalytic trimer of Methanococcus jannaschii aspartate transcarbamoylase in an orthorhombic crystal form.

Jacqueline Vitali1, Michael J Colaneri.   

Abstract

Crystals of the catalytic subunit of Methanococcus jannaschii aspartate transcarbamoylase in an orthorhombic crystal form contain four crystallographically independent trimers which associate in pairs to form stable staggered complexes that are similar to each other and to a previously determined monoclinic C2 form. Each subunit has a sulfate in the central channel. The catalytic subunits in these complexes show flexibility, with the elbow angles of the monomers differing by up to 7.4 degrees between crystal forms. Moreover, there is also flexibility in the relative orientation of the trimers around their threefold axis in the complexes, with a difference of 4 degrees between crystal forms.

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Year:  2008        PMID: 18765902      PMCID: PMC2531265          DOI: 10.1107/S1744309108025359

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  24 in total

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Authors:  L Jin; B Stec; W N Lipscomb; E R Kantrowitz
Journal:  Proteins       Date:  1999-12-01

2.  Binding of bisubstrate analog promotes large structural changes in the unregulated catalytic trimer of aspartate transcarbamoylase: implications for allosteric regulation.

Authors:  J A Endrizzi; P T Beernink; T Alber; H K Schachman
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-09       Impact factor: 11.205

3.  Rapid automated molecular replacement by evolutionary search.

Authors:  C R Kissinger; D K Gehlhaar; D B Fogel
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-02

4.  Use of non-crystallographic symmetry in protein structure refinement.

Authors:  G J Kleywegt
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1996-07-01

5.  Assessment of the allosteric mechanism of aspartate transcarbamoylase based on the crystalline structure of the unregulated catalytic subunit.

Authors:  P T Beernink; J A Endrizzi; T Alber; H K Schachman
Journal:  Proc Natl Acad Sci U S A       Date:  1999-05-11       Impact factor: 11.205

6.  Coot: model-building tools for molecular graphics.

Authors:  Paul Emsley; Kevin Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

7.  Characterization of the aspartate transcarbamoylase from Methanococcus jannaschii.

Authors:  E S Hack; T Vorobyova; J B Sakash; J M West; C P Macol; G Hervé; M K Williams; E R Kantrowitz
Journal:  J Biol Chem       Date:  2000-05-26       Impact factor: 5.157

8.  Monitoring the transition from the T to the R state in E.coli aspartate transcarbamoylase by X-ray crystallography: crystal structures of the E50A mutant enzyme in four distinct allosteric states.

Authors:  Kimberly Stieglitz; Boguslaw Stec; Darren P Baker; Evan R Kantrowitz
Journal:  J Mol Biol       Date:  2004-08-13       Impact factor: 5.469

9.  Aspartate transcarbamylase from the hyperthermophilic archaeon Pyrococcus abyssi: thermostability and 1.8A resolution crystal structure of the catalytic subunit complexed with the bisubstrate analogue N-phosphonacetyl-L-aspartate.

Authors:  Sigrid Van Boxstael; Raymond Cunin; Shakil Khan; Dominique Maes
Journal:  J Mol Biol       Date:  2003-02-07       Impact factor: 5.469

10.  Crystal structure of T state aspartate carbamoyltransferase of the hyperthermophilic archaeon Sulfolobus acidocaldarius.

Authors:  Dirk De Vos; Filip Van Petegem; Han Remaut; Christianne Legrain; Nicolas Glansdorff; Jozef J Van Beeumen
Journal:  J Mol Biol       Date:  2004-06-11       Impact factor: 5.469

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  3 in total

1.  Structure of the catalytic chain of Methanococcus jannaschii aspartate transcarbamoylase in a hexagonal crystal form: insights into the path of carbamoyl phosphate to the active site of the enzyme.

Authors:  Jacqueline Vitali; Aditya K Singh; Alexei S Soares; Michael J Colaneri
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-04-20

2.  Crystallization and preliminary X-ray analysis of aspartate transcarbamoylase from the parasitic protist Trypanosoma cruzi.

Authors:  Kazuaki Matoba; Takeshi Nara; Takashi Aoki; Teruki Honma; Akiko Tanaka; Masayuki Inoue; Shigeru Matsuoka; Daniel Ken Inaoka; Kiyoshi Kita; Shigeharu Harada
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-08-26

Review 3.  From Genome to Structure and Back Again: A Family Portrait of the Transcarbamylases.

Authors:  Dashuang Shi; Norma M Allewell; Mendel Tuchman
Journal:  Int J Mol Sci       Date:  2015-08-12       Impact factor: 5.923

  3 in total

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