Literature DB >> 18763762

Selecting aptamers for a glycoprotein through the incorporation of the boronic acid moiety.

Minyong Li1, Na Lin, Zhen Huang, Lupei Du, Craig Altier, Hao Fang, Binghe Wang.   

Abstract

The first general method for the selection of boronic acid-based aptamers (boronolectins) that allows for glycan substructure focusing is described. Using fibrinogen as a model glycoprotein, we have selected boronic acid-modified DNA aptamers that have high affinities (low nM Kd) and the ability to recognize changes in the glycosylation site. The method developed should also be applicable to the development of aptamers for other glycoproducts, such as glycolipids and glycopeptides.

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Year:  2008        PMID: 18763762      PMCID: PMC2655352          DOI: 10.1021/ja801510d

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  12 in total

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Authors:  Zhen Huang; Jack W Szostak
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2.  Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase.

Authors:  C Tuerk; L Gold
Journal:  Science       Date:  1990-08-03       Impact factor: 47.728

Review 3.  Functional aptamers and aptazymes in biotechnology, diagnostics, and therapy.

Authors:  Michael Famulok; Jörg S Hartig; Günter Mayer
Journal:  Chem Rev       Date:  2007-08-23       Impact factor: 60.622

4.  High-resolution molecular discrimination by RNA.

Authors:  R D Jenison; S C Gill; A Pardi; B Polisky
Journal:  Science       Date:  1994-03-11       Impact factor: 47.728

5.  Deglycosylation of glycoproteins by trifluoromethanesulfonic acid.

Authors:  A S Edge; C R Faltynek; L Hof; L E Reichert; P Weber
Journal:  Anal Biochem       Date:  1981-11-15       Impact factor: 3.365

6.  Selection in vitro of an RNA enzyme that specifically cleaves single-stranded DNA.

Authors:  D L Robertson; G F Joyce
Journal:  Nature       Date:  1990-03-29       Impact factor: 49.962

7.  Tuning the specificity of a synthetic receptor using a selected nucleic acid receptor.

Authors:  Joseph C Manimala; Sheryl L Wiskur; Andrew D Ellington; Eric V Anslyn
Journal:  J Am Chem Soc       Date:  2004-12-22       Impact factor: 15.419

Review 8.  Boronolectins and fluorescent boronolectins: an examination of the detailed chemistry issues important for the design.

Authors:  Jun Yan; Hao Fang; Binghe Wang
Journal:  Med Res Rev       Date:  2005-09       Impact factor: 12.944

Review 9.  Boronic acid compounds as potential pharmaceutical agents.

Authors:  Wenqian Yang; Xingming Gao; Binghe Wang
Journal:  Med Res Rev       Date:  2003-05       Impact factor: 12.944

10.  Crystal structure of the boronic acid-based proteasome inhibitor bortezomib in complex with the yeast 20S proteasome.

Authors:  Michael Groll; Celia R Berkers; Hidde L Ploegh; Huib Ovaa
Journal:  Structure       Date:  2006-03       Impact factor: 5.006

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  34 in total

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Journal:  Chem Rev       Date:  2009-05       Impact factor: 60.622

Review 2.  In vitro selection using modified or unnatural nucleotides.

Authors:  Scott M Knudsen; Michael P Robertson; Andrew D Ellington
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2002-02

Review 3.  Trends in the Design and Development of Specific Aptamers Against Peptides and Proteins.

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Journal:  Protein J       Date:  2016-04       Impact factor: 2.371

4.  Multivalent glycocluster design through directed evolution.

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5.  Chemical functionalization of oligodeoxynucleotides with multiple boronic acids for the polyvalent binding of saccharides.

Authors:  Amanda E Hargrove; Andrew D Ellington; Eric V Anslyn; Jonathan L Sessler
Journal:  Bioconjug Chem       Date:  2011-02-07       Impact factor: 4.774

Review 6.  The challenge and promise of glycomics.

Authors:  Richard D Cummings; J Michael Pierce
Journal:  Chem Biol       Date:  2014-01-16

Review 7.  Carbohydrate recognition by boronolectins, small molecules, and lectins.

Authors:  Shan Jin; Yunfeng Cheng; Suazette Reid; Minyong Li; Binghe Wang
Journal:  Med Res Rev       Date:  2010-03       Impact factor: 12.944

8.  Viral capsid DNA aptamer conjugates as multivalent cell-targeting vehicles.

Authors:  Gary J Tong; Sonny C Hsiao; Zachary M Carrico; Matthew B Francis
Journal:  J Am Chem Soc       Date:  2009-08-12       Impact factor: 15.419

9.  Rapid and specific post-synthesis modification of DNA through a biocompatible condensation of 1,2-aminothiols with 2-cyanobenzothiazole.

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Journal:  Chemistry       Date:  2013-02-28       Impact factor: 5.236

Review 10.  Cu(I)-catalyzed Huisgen azide-alkyne 1,3-dipolar cycloaddition reaction in nucleoside, nucleotide, and oligonucleotide chemistry.

Authors:  Franck Amblard; Jong Hyun Cho; Raymond F Schinazi
Journal:  Chem Rev       Date:  2009-09       Impact factor: 60.622

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