Literature DB >> 18758544

Estimating weak ratiometric signals in imaging data. II. Meta-analysis with multiple, dual-channel datasets.

Andrew Sornborger1, Josef Broder, Anirban Majumder, Ganesh Srinivasamoorthy, Erika Porter, Sean S Reagin, Charles Keith, James D Lauderdale.   

Abstract

Ratiometric fluorescent indicators are used for making quantitative measurements of a variety of physiological variables. Their utility is often limited by noise. This is the second in a series of papers describing statistical methods for denoising ratiometric data with the aim of obtaining improved quantitative estimates of variables of interest. Here, we outline a statistical optimization method that is designed for the analysis of ratiometric imaging data in which multiple measurements have been taken of systems responding to the same stimulation protocol. This method takes advantage of correlated information across multiple datasets for objectively detecting and estimating ratiometric signals. We demonstrate our method by showing results of its application on multiple, ratiometric calcium imaging experiments.

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Year:  2008        PMID: 18758544     DOI: 10.1364/josaa.25.002185

Source DB:  PubMed          Journal:  J Opt Soc Am A Opt Image Sci Vis        ISSN: 1084-7529            Impact factor:   2.129


  4 in total

Review 1.  The concept of λ-ratiometry in fluorescence sensing and imaging.

Authors:  Alexander P Demchenko
Journal:  J Fluoresc       Date:  2010-04-01       Impact factor: 2.217

2.  Dimensional reduction of a V1 ring model with simple and complex cells.

Authors:  Cong Wang; Louis Tao
Journal:  J Comput Neurosci       Date:  2014-07-27       Impact factor: 1.621

3.  A Multitaper, Causal Decomposition for Stochastic, Multivariate Time Series: Application to High-Frequency Calcium Imaging Data.

Authors:  Andrew T Sornborger; James D Lauderdale
Journal:  Conf Rec Asilomar Conf Signals Syst Comput       Date:  2017-03-06

4.  Mapping Functional Connectivity between Neuronal Ensembles with Larval Zebrafish Transgenic for a Ratiometric Calcium Indicator.

Authors:  Louis Tao; James D Lauderdale; Andrew T Sornborger
Journal:  Front Neural Circuits       Date:  2011-02-22       Impact factor: 3.492

  4 in total

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