Literature DB >> 18757873

SynBioSS: the synthetic biology modeling suite.

Anthony D Hill1, Jonathan R Tomshine, Emma M B Weeding, Vassilios Sotiropoulos, Yiannis N Kaznessis.   

Abstract

UNLABELLED: SynBioSS (Synthetic Biology Software Suite) is a suite of software for the modeling and simulation of synthetic genetic constructs. SynBioSS utilizes the registry of standard biological parts, a database of kinetic parameters, and both graphical and command-line interfaces to multiscale simulation algorithms. AVAILABILITY: SynBioSS is available under the GNU General Public License at http://synbioss.sourceforge.net.

Mesh：

Year:  2008        PMID： 18757873     DOI： 10.1093/bioinformatics/btn468

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  34 in total

1.  SynBioSS designer: a web-based tool for the automated generation of kinetic models for synthetic biological constructs.

Authors:  Emma Weeding; Jason Houle; Yiannis N Kaznessis
Journal:  Brief Bioinform       Date:  2010-02-24       Impact factor: 11.622

Review 2.  Foundations for the design and implementation of synthetic genetic circuits.

Authors:  Adrian L Slusarczyk; Allen Lin; Ron Weiss
Journal:  Nat Rev Genet       Date:  2012-05-18       Impact factor: 53.242

Review 3.  Genetic design automation: engineering fantasy or scientific renewal?

Authors:  Matthew W Lux; Brian W Bramlett; David A Ball; Jean Peccoud
Journal:  Trends Biotechnol       Date:  2011-10-14       Impact factor: 19.536

Review 4.  Consistent design schematics for biological systems: standardization of representation in biological engineering.

Authors:  Yukiko Matsuoka; Samik Ghosh; Hiroaki Kitano
Journal:  J R Soc Interface       Date:  2009-06-03       Impact factor: 4.118

Review 5.  Designing and encoding models for synthetic biology.

Authors:  Lukas Endler; Nicolas Rodriguez; Nick Juty; Vijayalakshmi Chelliah; Camille Laibe; Chen Li; Nicolas Le Novère
Journal:  J R Soc Interface       Date:  2009-04-01       Impact factor: 4.118

6.  proTeOn and proTeOff, new protein devices that inducibly activate bacterial gene expression.

Authors:  Katherine Volzing; Konstantinos Biliouris; Yiannis N Kaznessis
Journal:  ACS Chem Biol       Date:  2011-08-18       Impact factor: 5.100

Review 7.  The challenges of informatics in synthetic biology: from biomolecular networks to artificial organisms.

Authors:  Gil Alterovitz; Taro Muso; Marco F Ramoni
Journal:  Brief Bioinform       Date:  2009-11-11       Impact factor: 11.622

8.  Synthetic biology: a foundation for multi-scale molecular biology.

Authors:  Adam G Bower; Maria K McClintock; Stephen S Fong
Journal:  Bioeng Bugs       Date:  2010 Sep-Oct

9.  Computer-aided design of biological circuits using TinkerCell.

Authors:  Deepak Chandran; Frank T Bergmann; Herbert M Sauro
Journal:  Bioeng Bugs       Date:  2010 Jul-Aug

10.  Chemical master equation closure for computer-aided synthetic biology.

Authors:  Patrick Smadbeck; Yiannis N Kaznessis
Journal:  Methods Mol Biol       Date:  2015
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