Literature DB >> 21326830

Synthetic biology: a foundation for multi-scale molecular biology.

Adam G Bower1, Maria K McClintock, Stephen S Fong.   

Abstract

The field of synthetic biology has made rapid progress in a number of areas including method development, novel applications and community building. In seeking to make biology "engineerable," synthetic biology is increasing the accessibility of biological research to researchers of all experience levels and backgrounds. One of the underlying strengths of synthetic biology is that it may establish the framework for a rigorous bottom-up approach to studying biology starting at the DNA level. Building upon the existing framework established largely by the Registry of Standard Biological Parts, careful consideration of future goals may lead to integrated multi- scale approaches to biology. Here we describe some of the current challenges that need to be addressed or considered in detail to continue the development of synthetic biology. Specifically, discussion on the areas of elucidating biological principles, computational methods and experimental construction methodologies are presented.
© 2010 Landes Bioscience

Keywords:  DNA synthesis; biological standards; metabolic engineering; multi-scale; synthetic biology

Mesh:

Year:  2010        PMID: 21326830      PMCID: PMC3037580          DOI: 10.4161/bbug.1.5.12391

Source DB:  PubMed          Journal:  Bioeng Bugs        ISSN: 1949-1018


  38 in total

1.  Construction of a genetic toggle switch in Escherichia coli.

Authors:  T S Gardner; C R Cantor; J J Collins
Journal:  Nature       Date:  2000-01-20       Impact factor: 49.962

2.  Systems biology markup language: Level 2 and beyond.

Authors:  A Finney; M Hucka
Journal:  Biochem Soc Trans       Date:  2003-12       Impact factor: 5.407

3.  Reprogramming control of an allosteric signaling switch through modular recombination.

Authors:  John E Dueber; Brian J Yeh; Kayam Chak; Wendell A Lim
Journal:  Science       Date:  2003-09-26       Impact factor: 47.728

4.  SBMLToolbox: an SBML toolbox for MATLAB users.

Authors:  Sarah M Keating; Benjamin J Bornstein; Andrew Finney; Michael Hucka
Journal:  Bioinformatics       Date:  2006-03-30       Impact factor: 6.937

5.  A synthetic gene-metabolic oscillator.

Authors:  Eileen Fung; Wilson W Wong; Jason K Suen; Thomas Bulter; Sun-gu Lee; James C Liao
Journal:  Nature       Date:  2005-05-05       Impact factor: 49.962

6.  Computational methods in synthetic biology.

Authors:  Yiannis N Kaznessis
Journal:  Biotechnol J       Date:  2009-10       Impact factor: 4.677

7.  A tightly regulated inducible expression system utilizing the fim inversion recombination switch.

Authors:  Timothy S Ham; Sung Kuk Lee; Jay D Keasling; Adam P Arkin
Journal:  Biotechnol Bioeng       Date:  2006-05-05       Impact factor: 4.530

8.  TinkerCell: modular CAD tool for synthetic biology.

Authors:  Deepak Chandran; Frank T Bergmann; Herbert M Sauro
Journal:  J Biol Eng       Date:  2009-10-29       Impact factor: 4.355

9.  Writing DNA with GenoCAD.

Authors:  Michael J Czar; Yizhi Cai; Jean Peccoud
Journal:  Nucleic Acids Res       Date:  2009-05-08       Impact factor: 16.971

10.  A fast, robust and tunable synthetic gene oscillator.

Authors:  Jesse Stricker; Scott Cookson; Matthew R Bennett; William H Mather; Lev S Tsimring; Jeff Hasty
Journal:  Nature       Date:  2008-10-29       Impact factor: 49.962

View more
  1 in total

Review 1.  Developments in the tools and methodologies of synthetic biology.

Authors:  Richard Kelwick; James T MacDonald; Alexander J Webb; Paul Freemont
Journal:  Front Bioeng Biotechnol       Date:  2014-11-26
  1 in total

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