Literature DB >> 18729382

Plasmodium falciparum Sir2 is an NAD+-dependent deacetylase and an acetyllysine-dependent and acetyllysine-independent NAD+ glycohydrolase.

Jarrod B French1, Yana Cen, Anthony A Sauve.   

Abstract

Sirtuins are NAD (+)-dependent enzymes that deacetylate a variety of cellular proteins and in some cases catalyze protein ADP-ribosyl transfer. The catalytic mechanism of deacetylation is proposed to involve an ADPR-peptidylimidate, whereas the mechanism of ADP-ribosyl transfer to proteins is undetermined. Herein we characterize a Plasmodium falciparum sirtuin that catalyzes deacetylation of histone peptide sequences. Interestingly, the enzyme can also hydrolyze NAD (+). Two mechanisms of hydrolysis were identified and characterized. One is independent of acetyllysine substrate and produces alpha-stereochemistry as established by reaction of methanol which forms alpha-1- O-methyl-ADPR. This reaction is insensitive to nicotinamide inhibition. The second solvolytic mechanism is dependent on acetylated peptide and is proposed to involve the imidate to generate beta-stereochemistry. Stereochemistry was established by isolation of beta-1- O-methyl-ADPR when methanol was added as a cosolvent. This solvolytic reaction was inhibited by nicotinamide, suggesting that nicotinamide and solvent compete for the imidate. These findings establish new reactions of wildtype sirtuins and suggest possible mechanisms for ADP-ribosylation to proteins. These findings also illustrate the potential utility of nicotinamide as a probe for mechanisms of sirtuin-catalyzed ADP-ribosyl transfer.

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Year:  2008        PMID: 18729382      PMCID: PMC2732577          DOI: 10.1021/bi800767t

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  36 in total

1.  Role of NAD(+) in the deacetylase activity of the SIR2-like proteins.

Authors:  J Landry; J T Slama; R Sternglanz
Journal:  Biochem Biophys Res Commun       Date:  2000-11-30       Impact factor: 3.575

Review 2.  Sir2: an NAD-dependent histone deacetylase that connects chromatin silencing, metabolism, and aging.

Authors:  S Imai; F B Johnson; R A Marciniak; M McVey; P U Park; L Guarente
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2000

3.  A chromosomal SIR2 homologue with both histone NAD-dependent ADP-ribosyltransferase and deacetylase activities is involved in DNA repair in Trypanosoma brucei.

Authors:  José A García-Salcedo; Purificación Gijón; Derek P Nolan; Patricia Tebabi; Etienne Pays
Journal:  EMBO J       Date:  2003-11-03       Impact factor: 11.598

4.  Acetylation-dependent ADP-ribosylation by Trypanosoma brucei Sir2.

Authors:  Terri M Kowieski; Susan Lee; John M Denu
Journal:  J Biol Chem       Date:  2007-12-27       Impact factor: 5.157

5.  Structural determination and stereospecificity of the choleragen-catalyzed reaction of NAD+ with guanidines.

Authors:  N J Oppenheimer
Journal:  J Biol Chem       Date:  1978-07-25       Impact factor: 5.157

6.  Chemistry of gene silencing: the mechanism of NAD+-dependent deacetylation reactions.

Authors:  A A Sauve; I Celic; J Avalos; H Deng; J D Boeke; V L Schramm
Journal:  Biochemistry       Date:  2001-12-25       Impact factor: 3.162

7.  Inhibition of silencing and accelerated aging by nicotinamide, a putative negative regulator of yeast sir2 and human SIRT1.

Authors:  Kevin J Bitterman; Rozalyn M Anderson; Haim Y Cohen; Magda Latorre-Esteves; David A Sinclair
Journal:  J Biol Chem       Date:  2002-09-23       Impact factor: 5.157

8.  Sir2 regulation by nicotinamide results from switching between base exchange and deacetylation chemistry.

Authors:  Anthony A Sauve; Vern L Schramm
Journal:  Biochemistry       Date:  2003-08-12       Impact factor: 3.162

9.  Crystal structure of diphtheria toxin bound to nicotinamide adenine dinucleotide.

Authors:  C E Bell; D Eisenberg
Journal:  Biochemistry       Date:  1996-01-30       Impact factor: 3.162

10.  Structure of the yeast Hst2 protein deacetylase in ternary complex with 2'-O-acetyl ADP ribose and histone peptide.

Authors:  Kehao Zhao; Xiaomei Chai; Ronen Marmorstein
Journal:  Structure       Date:  2003-11       Impact factor: 5.006

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  22 in total

Review 1.  Chromatin-mediated epigenetic regulation in the malaria parasite Plasmodium falciparum.

Authors:  Liwang Cui; Jun Miao
Journal:  Eukaryot Cell       Date:  2010-05-07

Review 2.  Epigenetics in Plasmodium: what do we really know?

Authors:  Catherine J Merrick; Manoj T Duraisingh
Journal:  Eukaryot Cell       Date:  2010-06-18

3.  Structural and functional analysis of human SIRT1.

Authors:  Andrew M Davenport; Ferdinand M Huber; André Hoelz
Journal:  J Mol Biol       Date:  2013-10-10       Impact factor: 5.469

4.  The diversity of histone versus nonhistone sirtuin substrates.

Authors:  Paloma Martínez-Redondo; Alejandro Vaquero
Journal:  Genes Cancer       Date:  2013-03

5.  Trichostatin A inhibits deacetylation of histone H3 and p53 by SIRT6.

Authors:  Marci Wood; Stacia Rymarchyk; Song Zheng; Yana Cen
Journal:  Arch Biochem Biophys       Date:  2017-12-09       Impact factor: 4.013

6.  Plasmodium falciparum Sir2A preferentially hydrolyzes medium and long chain fatty acyl lysine.

Authors:  Anita Y Zhu; Yeyun Zhou; Saba Khan; Kirk W Deitsch; Quan Hao; Hening Lin
Journal:  ACS Chem Biol       Date:  2011-10-21       Impact factor: 5.100

7.  Differential, positional-dependent transcriptional response of antigenic variation (var) genes to biological stress in Plasmodium falciparum.

Authors:  Elli Rosenberg; Amir Ben-Shmuel; Oshrit Shalev; Rosa Sinay; Alan Cowman; Yaakov Pollack
Journal:  PLoS One       Date:  2009-09-10       Impact factor: 3.240

8.  Universal features of post-transcriptional gene regulation are critical for Plasmodium zygote development.

Authors:  Gunnar R Mair; Edwin Lasonder; Lindsey S Garver; Blandine M D Franke-Fayard; Céline K Carret; Joop C A G Wiegant; Roeland W Dirks; George Dimopoulos; Chris J Janse; Andrew P Waters
Journal:  PLoS Pathog       Date:  2010-02-12       Impact factor: 6.823

9.  Side chain specificity of ADP-ribosylation by a sirtuin.

Authors:  Kamau Fahie; Po Hu; Stephen Swatkoski; Robert J Cotter; Yingkai Zhang; Cynthia Wolberger
Journal:  FEBS J       Date:  2009-11-06       Impact factor: 5.542

Review 10.  Mechanisms and molecular probes of sirtuins.

Authors:  Brian C Smith; William C Hallows; John M Denu
Journal:  Chem Biol       Date:  2008-10-20
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