Literature DB >> 18722483

Genome organization: balancing stability and plasticity.

Malte Wachsmuth1, Maïwen Caudron-Herger, Karsten Rippe.   

Abstract

The cell needs to stably maintain its genome and protect it from uncontrolled modifications that would compromise its function. At the same time, the genome has to be a plastic structure that can dynamically (re)organize to allow the cell to adopt different functional states. These dynamics occur on the nanometer to micrometer length scale, i.e. ranging from the level of single proteins up to that of whole chromosomes, and on a microsecond to hour time scale. Here, we review different contributions to the dynamic features of the genome, describe how they are determined experimentally, and discuss the results of these measurements in terms of how the requirements for stability and plasticity are accommodated with specific activities in the nucleus.

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Year:  2008        PMID: 18722483     DOI: 10.1016/j.bbamcr.2008.07.022

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  36 in total

1.  Dissecting chromatin interactions in living cells from protein mobility maps.

Authors:  Fabian Erdel; Katharina Müller-Ott; Michael Baum; Malte Wachsmuth; Karsten Rippe
Journal:  Chromosome Res       Date:  2011-01       Impact factor: 5.239

2.  Exploring the conformational space of chromatin fibers and their stability by numerical dynamic phase diagrams.

Authors:  René Stehr; Robert Schöpflin; Ramona Ettig; Nick Kepper; Karsten Rippe; Gero Wedemann
Journal:  Biophys J       Date:  2010-03-17       Impact factor: 4.033

3.  Balbiani ring mRNPs diffuse through and bind to clusters of large intranuclear molecular structures.

Authors:  Roman Veith; Thomas Sorkalla; Eugen Baumgart; Johannes Anzt; Hanns Häberlein; Sanjay Tyagi; Jan Peter Siebrasse; Ulrich Kubitscheck
Journal:  Biophys J       Date:  2010-10-20       Impact factor: 4.033

Review 4.  Structure determination of genomic domains by satisfaction of spatial restraints.

Authors:  Davide Baù; Marc A Marti-Renom
Journal:  Chromosome Res       Date:  2011-01       Impact factor: 5.239

5.  Human ISWI chromatin-remodeling complexes sample nucleosomes via transient binding reactions and become immobilized at active sites.

Authors:  Fabian Erdel; Thomas Schubert; Caroline Marth; Gernot Längst; Karsten Rippe
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-25       Impact factor: 11.205

6.  Dynamics of telomeres and promyelocytic leukemia nuclear bodies in a telomerase-negative human cell line.

Authors:  Thibaud Jegou; Inn Chung; Gerrit Heuvelman; Malte Wachsmuth; Sabine M Görisch; Karin M Greulich-Bode; Petra Boukamp; Peter Lichter; Karsten Rippe
Journal:  Mol Biol Cell       Date:  2009-02-11       Impact factor: 4.138

Review 7.  Molecular diffusion and binding analyzed with FRAP.

Authors:  Malte Wachsmuth
Journal:  Protoplasma       Date:  2014-01-04       Impact factor: 3.356

8.  Analysis of protein mobilities and interactions in living cells by multifocal fluorescence fluctuation microscopy.

Authors:  Gerrit Heuvelman; Fabian Erdel; Malte Wachsmuth; Karsten Rippe
Journal:  Eur Biophys J       Date:  2009-06-19       Impact factor: 1.733

9.  4D chromatin dynamics in cycling cells: Theodor Boveri's hypotheses revisited.

Authors:  Hilmar Strickfaden; Andreas Zunhammer; Silvana van Koningsbruggen; Daniela Köhler; Thomas Cremer
Journal:  Nucleus       Date:  2010-04-06       Impact factor: 4.197

10.  Random Motion of Chromatin Is Influenced by Lamin A Interconnections.

Authors:  Fereydoon Taheri; Buse Isbilir; Gabriele Müller; Jan W Krieger; Giuseppe Chirico; Jörg Langowski; Katalin Tóth
Journal:  Biophys J       Date:  2018-05-11       Impact factor: 4.033

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