Literature DB >> 18714290

Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges.

Lincoln D Stein1.   

Abstract

Biology is an information-driven science. Large-scale data sets from genomics, physiology, population genetics and imaging are driving research at a dizzying rate. Simultaneously, interdisciplinary collaborations among experimental biologists, theorists, statisticians and computer scientists have become the key to making effective use of these data sets. However, too many biologists have trouble accessing and using these electronic data sets and tools effectively. A 'cyberinfrastructure' is a combination of databases, network protocols and computational services that brings people, information and computational tools together to perform science in this information-driven world. This article reviews the components of a biological cyberinfrastructure, discusses current and pending implementations, and notes the many challenges that lie ahead.

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Year:  2008        PMID: 18714290     DOI: 10.1038/nrg2414

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  43 in total

Review 1.  Computational tools for prioritizing candidate genes: boosting disease gene discovery.

Authors:  Yves Moreau; Léon-Charles Tranchevent
Journal:  Nat Rev Genet       Date:  2012-07-03       Impact factor: 53.242

Review 2.  Genotype-phenotype databases: challenges and solutions for the post-genomic era.

Authors:  Gudmundur A Thorisson; Juha Muilu; Anthony J Brookes
Journal:  Nat Rev Genet       Date:  2009-01       Impact factor: 53.242

Review 3.  Applying mass spectrometry-based proteomics to genetics, genomics and network biology.

Authors:  Matthias Gstaiger; Ruedi Aebersold
Journal:  Nat Rev Genet       Date:  2009-09       Impact factor: 53.242

4.  KBWS: an EMBOSS associated package for accessing bioinformatics web services.

Authors:  Kazuki Oshita; Kazuharu Arakawa; Masaru Tomita
Journal:  Source Code Biol Med       Date:  2011-04-29

5.  In silico identification of new genetic variations as potential risk factors for Alzheimer's disease in a microarray-oriented simulation.

Authors:  R R Lemos; C H Castelletti; J L Lima Filho; E T Marques; J R M Oliveira
Journal:  J Mol Neurosci       Date:  2009-03-17       Impact factor: 3.444

6.  Searching for new genetic risk factors for neuropsychiatric disorders in expression databases.

Authors:  Manuela Barbosa Rodrigues de Souza; Roberta Rodrigues de Lemos; José Eriton Gomes da Cunha; José Luiz de Lima Filho; João Ricardo Mendes de Oliveira
Journal:  J Mol Neurosci       Date:  2010-01-19       Impact factor: 3.444

Review 7.  Novel insights into adipogenesis from omics data.

Authors:  Andreas Prokesch; Hubert Hackl; Robab Hakim-Weber; Stefan R Bornstein; Zlatko Trajanoski
Journal:  Curr Med Chem       Date:  2009       Impact factor: 4.530

8.  Mouse, man, and meaning: bridging the semantics of mouse phenotype and human disease.

Authors:  John M Hancock; Ann-Marie Mallon; Tim Beck; Georgios V Gkoutos; Chris Mungall; Paul N Schofield
Journal:  Mamm Genome       Date:  2009-08-02       Impact factor: 2.957

9.  DASMIweb: online integration, analysis and assessment of distributed protein interaction data.

Authors:  Hagen Blankenburg; Fidel Ramírez; Joachim Büch; Mario Albrecht
Journal:  Nucleic Acids Res       Date:  2009-06-05       Impact factor: 16.971

10.  Structuring and extracting knowledge for the support of hypothesis generation in molecular biology.

Authors:  Marco Roos; M Scott Marshall; Andrew P Gibson; Martijn Schuemie; Edgar Meij; Sophia Katrenko; Willem Robert van Hage; Konstantinos Krommydas; Pieter W Adriaans
Journal:  BMC Bioinformatics       Date:  2009-10-01       Impact factor: 3.169

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