Literature DB >> 18710284

Evolving trends in the dereplication of natural product extracts: new methodology for rapid, small-scale investigation of natural product extracts.

Gerhard Lang1, Nor Ainy Mayhudin, Maya I Mitova, Lin Sun, Sonia van der Sar, John W Blunt, Anthony L J Cole, Gill Ellis, Hartmut Laatsch, Murray H G Munro.   

Abstract

The use of an HPLC bioactivity profiling/microtiter plate technique in conjunction with capillary probe NMR instrumentation and access to appropriate databases effectively short-circuits conventional dereplication procedures, necessarily based on multimilligram extracts, to a single, more rapid submilligram operation. This approach to dereplication is illustrated using fungal or bacterial extracts that contain known compounds. In each case the dereplication steps were carried out on microgram quantities of extract and demonstrate the discriminating power of (1)H NMR spectroscopy as a definitive dereplication tool.

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Year:  2008        PMID: 18710284     DOI: 10.1021/np8002222

Source DB:  PubMed          Journal:  J Nat Prod        ISSN: 0163-3864            Impact factor:   4.050


  46 in total

1.  Dereplication, residual complexity, and rational naming: the case of the Actaea triterpenes.

Authors:  Feng Qiu; Ayano Imai; James B McAlpine; David C Lankin; Ian Burton; Tobias Karakach; Norman R Farnsworth; Shao-Nong Chen; Guido F Pauli
Journal:  J Nat Prod       Date:  2012-02-09       Impact factor: 4.050

Review 2.  Current approaches to exploit actinomycetes as a source of novel natural products.

Authors:  Olga Genilloud; Ignacio González; Oscar Salazar; Jesus Martín; José Rubén Tormo; Francisca Vicente
Journal:  J Ind Microbiol Biotechnol       Date:  2010-10-08       Impact factor: 3.346

3.  Multiplexed NMR: an automated CapNMR dual-sample probe.

Authors:  James A Norcross; Craig T Milling; Dean L Olson; Duanxiang Xu; Anthony Audrieth; Robert Albrecht; Ke Ruan; John Likos; Claude Jones; Timothy L Peck
Journal:  Anal Chem       Date:  2010-09-01       Impact factor: 6.986

4.  UPLC-MS-ELSD-PDA as a powerful dereplication tool to facilitate compound identification from small-molecule natural product libraries.

Authors:  Jin Yang; Qian Liang; Mei Wang; Cynthia Jeffries; David Smithson; Ying Tu; Nidal Boulos; Melissa R Jacob; Anang A Shelat; Yunshan Wu; Ranga Rao Ravu; Richard Gilbertson; Mitchell A Avery; Ikhlas A Khan; Larry A Walker; R Kiplin Guy; Xing-Cong Li
Journal:  J Nat Prod       Date:  2014-03-11       Impact factor: 4.050

5.  Natural product libraries to accelerate the high-throughput discovery of therapeutic leads.

Authors:  Tyler A Johnson; Johann Sohn; Wayne D Inman; Samarkand A Estee; Steven T Loveridge; Helene C Vervoort; Karen Tenney; Junke Liu; Kenny Kean-Hooi Ang; Joseline Ratnam; Walter M Bray; Nadine C Gassner; Young Y Shen; R Scott Lokey; James H McKerrow; Kyria Boundy-Mills; Arif Nukanto; Atit Kanti; Heddy Julistiono; Leonardus B S Kardono; Leonard F Bjeldanes; Phillip Crews
Journal:  J Nat Prod       Date:  2011-11-30       Impact factor: 4.050

6.  Antiproliferative and antimalarial sesquiterpene lactones from Piptocoma antillana from Puerto Rico.

Authors:  Yixi Liu; L Harinantenaina Rakotondraibea; Peggy J Brodie; Jessica D Wiley; Maria B Cassera; Michael Goetzc; David G I Kingstona
Journal:  Nat Prod Commun       Date:  2014-10       Impact factor: 0.986

Review 7.  Mass spectrometry of natural products: current, emerging and future technologies.

Authors:  Amina Bouslimani; Laura M Sanchez; Neha Garg; Pieter C Dorrestein
Journal:  Nat Prod Rep       Date:  2014-05-07       Impact factor: 13.423

8.  Dereplication and de novo sequencing of nonribosomal peptides.

Authors:  Julio Ng; Nuno Bandeira; Wei-Ting Liu; Majid Ghassemian; Thomas L Simmons; William H Gerwick; Roger Linington; Pieter C Dorrestein; Pavel A Pevzner
Journal:  Nat Methods       Date:  2009-07-13       Impact factor: 28.547

9.  Integrated metabolomics approach facilitates discovery of an unpredicted natural product suite from Streptomyces coelicolor M145.

Authors:  Ashley M Sidebottom; Andrew R Johnson; Jonathan A Karty; Darci J Trader; Erin E Carlson
Journal:  ACS Chem Biol       Date:  2013-07-01       Impact factor: 5.100

10.  Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking.

Authors:  Mingxun Wang; Jeremy J Carver; Vanessa V Phelan; Laura M Sanchez; Neha Garg; Yao Peng; Don Duy Nguyen; Jeramie Watrous; Clifford A Kapono; Tal Luzzatto-Knaan; Carla Porto; Amina Bouslimani; Alexey V Melnik; Michael J Meehan; Wei-Ting Liu; Max Crüsemann; Paul D Boudreau; Eduardo Esquenazi; Mario Sandoval-Calderón; Roland D Kersten; Laura A Pace; Robert A Quinn; Katherine R Duncan; Cheng-Chih Hsu; Dimitrios J Floros; Ronnie G Gavilan; Karin Kleigrewe; Trent Northen; Rachel J Dutton; Delphine Parrot; Erin E Carlson; Bertrand Aigle; Charlotte F Michelsen; Lars Jelsbak; Christian Sohlenkamp; Pavel Pevzner; Anna Edlund; Jeffrey McLean; Jörn Piel; Brian T Murphy; Lena Gerwick; Chih-Chuang Liaw; Yu-Liang Yang; Hans-Ulrich Humpf; Maria Maansson; Robert A Keyzers; Amy C Sims; Andrew R Johnson; Ashley M Sidebottom; Brian E Sedio; Andreas Klitgaard; Charles B Larson; Cristopher A Boya P; Daniel Torres-Mendoza; David J Gonzalez; Denise B Silva; Lucas M Marques; Daniel P Demarque; Egle Pociute; Ellis C O'Neill; Enora Briand; Eric J N Helfrich; Eve A Granatosky; Evgenia Glukhov; Florian Ryffel; Hailey Houson; Hosein Mohimani; Jenan J Kharbush; Yi Zeng; Julia A Vorholt; Kenji L Kurita; Pep Charusanti; Kerry L McPhail; Kristian Fog Nielsen; Lisa Vuong; Maryam Elfeki; Matthew F Traxler; Niclas Engene; Nobuhiro Koyama; Oliver B Vining; Ralph Baric; Ricardo R Silva; Samantha J Mascuch; Sophie Tomasi; Stefan Jenkins; Venkat Macherla; Thomas Hoffman; Vinayak Agarwal; Philip G Williams; Jingqui Dai; Ram Neupane; Joshua Gurr; Andrés M C Rodríguez; Anne Lamsa; Chen Zhang; Kathleen Dorrestein; Brendan M Duggan; Jehad Almaliti; Pierre-Marie Allard; Prasad Phapale; Louis-Felix Nothias; Theodore Alexandrov; Marc Litaudon; Jean-Luc Wolfender; Jennifer E Kyle; Thomas O Metz; Tyler Peryea; Dac-Trung Nguyen; Danielle VanLeer; Paul Shinn; Ajit Jadhav; Rolf Müller; Katrina M Waters; Wenyuan Shi; Xueting Liu; Lixin Zhang; Rob Knight; Paul R Jensen; Bernhard O Palsson; Kit Pogliano; Roger G Linington; Marcelino Gutiérrez; Norberto P Lopes; William H Gerwick; Bradley S Moore; Pieter C Dorrestein; Nuno Bandeira
Journal:  Nat Biotechnol       Date:  2016-08-09       Impact factor: 54.908

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