Literature DB >> 18704155

Oscillations in multi-stable monotone systems with slowly varying feedback.

Tomáš Gedeon1, Eduardo D Sontag.   

Abstract

The study of dynamics of gene regulatory networks is of increasing interest in systems biology. A useful approach to the study of these complex systems is to view them as decomposed into feedback loops around open loop monotone systems. Key features of the dynamics of the original system are then deduced from the input-output characteristics of the open loop system and the sign of the feedback. This paper extends these results, showing how to use the same framework of input-output systems in order to prove existence of oscillations, if the slowly varying strength of the feedback depends on the state of the system.

Entities:  

Year:  2007        PMID: 18704155      PMCID: PMC2083657          DOI: 10.1016/j.jde.2007.05.029

Source DB:  PubMed          Journal:  J Differ Equ        ISSN: 0022-0396            Impact factor:   2.430


  14 in total

1.  Distinct, constitutively active MAPK phosphatases function in Xenopus oocytes: implications for p42 MAPK regulation In vivo.

Authors:  M L Sohaskey; J E Ferrell
Journal:  Mol Biol Cell       Date:  1999-11       Impact factor: 4.138

2.  A synthetic oscillatory network of transcriptional regulators.

Authors:  M B Elowitz; S Leibler
Journal:  Nature       Date:  2000-01-20       Impact factor: 49.962

3.  Negative feedback and ultrasensitivity can bring about oscillations in the mitogen-activated protein kinase cascades.

Authors:  B N Kholodenko
Journal:  Eur J Biochem       Date:  2000-03

4.  Testing a mathematical model of the yeast cell cycle.

Authors:  Frederick R Cross; Vincent Archambault; Mary Miller; Martha Klovstad
Journal:  Mol Biol Cell       Date:  2002-01       Impact factor: 4.138

5.  Building a cell cycle oscillator: hysteresis and bistability in the activation of Cdc2.

Authors:  Joseph R Pomerening; Eduardo D Sontag; James E Ferrell
Journal:  Nat Cell Biol       Date:  2003-04       Impact factor: 28.824

6.  On predator-prey systems and small-gain theorems.

Authors:  Patrick De Leenheer; David Angeli; Eduardo D Sontag
Journal:  Math Biosci Eng       Date:  2005-01       Impact factor: 2.080

7.  Structure theorems and the dynamics of nitrogen catabolite repression in yeast.

Authors:  Erik M Boczko; Terrance G Cooper; Tomas Gedeon; Konstantin Mischaikow; Deborah G Murdock; Siddharth Pratap; K Sam Wells
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-06       Impact factor: 11.205

8.  ENZYME INDUCTION AS AN ALL-OR-NONE PHENOMENON.

Authors:  A Novick; M Weiner
Journal:  Proc Natl Acad Sci U S A       Date:  1957-07-15       Impact factor: 11.205

9.  The biochemical basis of an all-or-none cell fate switch in Xenopus oocytes.

Authors:  J E Ferrell; E M Machleder
Journal:  Science       Date:  1998-05-08       Impact factor: 47.728

10.  Bistability in the JNK cascade.

Authors:  C P Bagowski; J E Ferrell
Journal:  Curr Biol       Date:  2001-08-07       Impact factor: 10.834

View more
  1 in total

1.  Monotone and near-monotone biochemical networks.

Authors:  Eduardo D Sontag
Journal:  Syst Synth Biol       Date:  2007-07-04
  1 in total

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