Literature DB >> 18693904

Decompositional terminology translation using network analysis.

Chintan O Patel1, James J Cimino.   

Abstract

Biomedical terminologies often contain composite concepts that cannot be translated into single unique synonymous concepts in a target controlled terminology. Such composite concepts need to be decomposed into sets of component concepts present in the target terminology that can serve as the proxy for applications in information retrieval, decision support or data analysis. Towards this goal, we use a "clustering coefficient" over the UMLS Metathesaurus to traverse the closely clustered neighbors of the composite source concept to generate a ranked list of possible component concepts. Using the MeSH Associated Expression mappings as the gold-standard, we show that the proposed approach generates relevant component concepts as compared to existing semantic locality based methods. The topological connectivity of the concepts in the UMLS Metathesaurus is a useful feature that can be coupled with existing lexical and semantic locality based approaches towards terminology translation.

Mesh:

Year:  2007        PMID: 18693904      PMCID: PMC2655901     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  9 in total

1.  Terminology issues in user access to Web-based medical information.

Authors:  A T McCray; R F Loane; A C Browne; A K Bangalore
Journal:  Proc AMIA Symp       Date:  1999

2.  Evaluation of lexical methods for detecting relationships between concepts from multiple ontologies.

Authors:  Helen L Johnson; K Bretonnel Cohen; William A Baumgartner; Zhiyong Lu; Michael Bada; Todd Kester; Hyunmin Kim; Lawrence Hunter
Journal:  Pac Symp Biocomput       Date:  2006

3.  Aligning biomedical ontologies using lexical methods and the UMLS: the case of disease ontologies.

Authors:  Gwenaëlle Marquet; Jean Mosser; Anita Burgun
Journal:  Stud Health Technol Inform       Date:  2006

4.  A scale-free network view of the UMLS to learn terminology translations.

Authors:  Chintan O Patel; James J Cimino
Journal:  Stud Health Technol Inform       Date:  2007

5.  Collective dynamics of 'small-world' networks.

Authors:  D J Watts; S H Strogatz
Journal:  Nature       Date:  1998-06-04       Impact factor: 49.962

6.  Beyond synonymy: exploiting the UMLS semantics in mapping vocabularies.

Authors:  O Bodenreider; S J Nelson; W T Hole; H F Chang
Journal:  Proc AMIA Symp       Date:  1998

7.  Supporting infobuttons with terminological knowledge.

Authors:  J J Cimino; G Elhanan; Q Zeng
Journal:  Proc AMIA Annu Fall Symp       Date:  1997

8.  The Unified Medical Language System.

Authors:  D A Lindberg; B L Humphreys; A T McCray
Journal:  Methods Inf Med       Date:  1993-08       Impact factor: 2.176

9.  An automated method for finding molecular complexes in large protein interaction networks.

Authors:  Gary D Bader; Christopher W V Hogue
Journal:  BMC Bioinformatics       Date:  2003-01-13       Impact factor: 3.169

  9 in total
  3 in total

Review 1.  A review of auditing methods applied to the content of controlled biomedical terminologies.

Authors:  Xinxin Zhu; Jung-Wei Fan; David M Baorto; Chunhua Weng; James J Cimino
Journal:  J Biomed Inform       Date:  2009-03-12       Impact factor: 6.317

2.  Using semantic and structural properties of the Unified Medical Language System to discover potential terminological relationships.

Authors:  Chintan O Patel; James J Cimino
Journal:  J Am Med Inform Assoc       Date:  2009-03-04       Impact factor: 4.497

3.  A network-theoretic approach for decompositional translation across Open Biological Ontologies.

Authors:  Chintan O Patel; James J Cimino
Journal:  J Biomed Inform       Date:  2010-02-06       Impact factor: 6.317

  3 in total

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