Literature DB >> 17911805

A scale-free network view of the UMLS to learn terminology translations.

Chintan O Patel1, James J Cimino.   

Abstract

The UMLS Metathesaurus belongs to the class of scale-free networks with few concept hubs possessing a large number of relationships. The hubs provide useful links between the concepts from disparate terminologies in the UMLS; however, they also exponentially increase the number of possible transitive cross-terminology paths. Towards the goal of using machine learning to rank cross-terminology translations, we propose a traversal algorithm that exploits the scale-free property of the UMLS to reduce the number of candidate translations. We characterize the concept hubs into "informational" and "noisy" concept hubs and provide an automated method to detect them. Using gold standard mappings from SNOMED-CT to ICD9CM, we found an average 20-fold reduction in the number of candidate mappings while achieving comparable recall and ranking results. A hub-driven traversal strategy provides a promising approach to generate high quality cross-terminology translations from the UMLS.

Mesh:

Year:  2007        PMID: 17911805

Source DB:  PubMed          Journal:  Stud Health Technol Inform        ISSN: 0926-9630


  5 in total

1.  Decompositional terminology translation using network analysis.

Authors:  Chintan O Patel; James J Cimino
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

2.  Using semantic and structural properties of the Unified Medical Language System to discover potential terminological relationships.

Authors:  Chintan O Patel; James J Cimino
Journal:  J Am Med Inform Assoc       Date:  2009-03-04       Impact factor: 4.497

3.  A network-theoretic approach for decompositional translation across Open Biological Ontologies.

Authors:  Chintan O Patel; James J Cimino
Journal:  J Biomed Inform       Date:  2010-02-06       Impact factor: 6.317

4.  Next generation phenotyping using the unified medical language system.

Authors:  Tomasz Adamusiak; Naoki Shimoyama; Mary Shimoyama
Journal:  JMIR Med Inform       Date:  2014-03-18

5.  Physician nurse care: A new use of UMLS to measure professional contribution: Are we talking about the same patient a new graph matching algorithm?

Authors:  Andrew D Boyd; Karen Dunn Lopez; Camillo Lugaresi; Tamara Macieira; Vanessa Sousa; Sabita Acharya; Abhinaya Balasubramanian; Khawllah Roussi; Gail M Keenan; Yves A Lussier; Jianrong 'John' Li; Michel Burton; Barbara Di Eugenio
Journal:  Int J Med Inform       Date:  2018-02-09       Impact factor: 4.046

  5 in total

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