Literature DB >> 18693847

Computerized pathological image analysis for neuroblastoma prognosis.

Metin N Gurcan1, Jun Kong, Olcay Sertel, B Barla Cambazoglu, Joel Saltz, Umit Catalyurek.   

Abstract

We present a pathological image analysis system for the computer-aided prognosis of neuroblastoma, a childhood cancer. The image analysis system automatically classifies Schwannian stromal development of pathological tissues and determines the grade of differentiation. Due to the demanding computational cost of processing large digitized slides, the system was implemented on a cluster of computers with automated load balancing within a multi-resolution framework. In our experiments, the overall accuracies for stromal classification and the grade of differentiation were 96.6% and 95.3%, respectively. Additionally, the multi-resolution framework reduced the run time of the single resolution approach by 53% and 34% on average for stromal classification and grade of differentiation, respectively. For these two cases, parallelization on a 16-node cluster reduced the sequential run time by 92% and 88% on average. Accuracy and efficiency of these techniques are promising for the development a computer-assisted neuroblastoma prognosis system.

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Year:  2007        PMID: 18693847      PMCID: PMC2655895     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  2 in total

1.  The International Neuroblastoma Pathology Classification (the Shimada system).

Authors:  H Shimada; I M Ambros; L P Dehner; J Hata; V V Joshi; B Roald; D O Stram; R B Gerbing; J N Lukens; K K Matthay; R P Castleberry
Journal:  Cancer       Date:  1999-07-15       Impact factor: 6.860

2.  Histopathologic prognostic factors in neuroblastic tumors: definition of subtypes of ganglioneuroblastoma and an age-linked classification of neuroblastomas.

Authors:  H Shimada; J Chatten; W A Newton; N Sachs; A B Hamoudi; T Chiba; H B Marsden; K Misugi
Journal:  J Natl Cancer Inst       Date:  1984-08       Impact factor: 13.506

  2 in total
  12 in total

1.  ImageMiner: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology.

Authors:  David J Foran; Lin Yang; Wenjin Chen; Jun Hu; Lauri A Goodell; Michael Reiss; Fusheng Wang; Tahsin Kurc; Tony Pan; Ashish Sharma; Joel H Saltz
Journal:  J Am Med Inform Assoc       Date:  2011-05-23       Impact factor: 4.497

2.  A general framework for the segmentation of follicular lymphoma virtual slides.

Authors:  Myriam Oger; Philippe Belhomme; Metin N Gurcan
Journal:  Comput Med Imaging Graph       Date:  2012-06-18       Impact factor: 4.790

3.  Digital Pathology: Data-Intensive Frontier in Medical Imaging: Health-information sharing, specifically of digital pathology, is the subject of this paper which discusses how sharing the rich images in pathology can stretch the capabilities of all otherwise well-practiced disciplines.

Authors:  Lee A D Cooper; Alexis B Carter; Alton B Farris; Fusheng Wang; Jun Kong; David A Gutman; Patrick Widener; Tony C Pan; Sharath R Cholleti; Ashish Sharma; Tahsin M Kurc; Daniel J Brat; Joel H Saltz
Journal:  Proc IEEE Inst Electr Electron Eng       Date:  2012-04       Impact factor: 10.961

4.  Detection of follicles from IHC-stained slides of follicular lymphoma using iterative watershed.

Authors:  Siddharth Samsi; Gerard Lozanski; Arwa Shana'ah; Ashok K Krishanmurthy; Metin N Gurcan
Journal:  IEEE Trans Biomed Eng       Date:  2010-07-15       Impact factor: 4.538

5.  Digital pathology image analysis: opportunities and challenges.

Authors:  Anant Madabhushi
Journal:  Imaging Med       Date:  2009

6.  An Efficient Computational Framework for the Analysis of Whole Slide Images: Application to Follicular Lymphoma Immunohistochemistry.

Authors:  Siddharth Samsi; Ashok K Krishnamurthy; Metin N Gurcan
Journal:  J Comput Sci       Date:  2012-03-06

Review 7.  PanCancer insights from The Cancer Genome Atlas: the pathologist's perspective.

Authors:  Lee Ad Cooper; Elizabeth G Demicco; Joel H Saltz; Reid T Powell; Arvind Rao; Alexander J Lazar
Journal:  J Pathol       Date:  2018-02-22       Impact factor: 7.996

8.  Multi-field-of-view strategy for image-based outcome prediction of multi-parametric estrogen receptor-positive breast cancer histopathology: Comparison to Oncotype DX.

Authors:  Ajay Basavanhally; Michael Feldman; Natalie Shih; Carolyn Mies; John Tomaszewski; Shridar Ganesan; Anant Madabhushi
Journal:  J Pathol Inform       Date:  2012-01-19

9.  A data model and database for high-resolution pathology analytical image informatics.

Authors:  Fusheng Wang; Jun Kong; Lee Cooper; Tony Pan; Tahsin Kurc; Wenjin Chen; Ashish Sharma; Cristobal Niedermayr; Tae W Oh; Daniel Brat; Alton B Farris; David J Foran; Joel Saltz
Journal:  J Pathol Inform       Date:  2011-07-26

10.  Integrated morphologic analysis for the identification and characterization of disease subtypes.

Authors:  Lee A D Cooper; Jun Kong; David A Gutman; Fusheng Wang; Jingjing Gao; Christina Appin; Sharath Cholleti; Tony Pan; Ashish Sharma; Lisa Scarpace; Tom Mikkelsen; Tahsin Kurc; Carlos S Moreno; Daniel J Brat; Joel H Saltz
Journal:  J Am Med Inform Assoc       Date:  2012-01-24       Impact factor: 4.497

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