Literature DB >> 18693792

A model for indexing medical documents combining statistical and symbolic knowledge.

Paul Avillach1, Michel Joubert, Marius Fieschi.   

Abstract

OBJECTIVES: To develop and evaluate an information processing method based on terminologies, in order to index medical documents in any given documentary context.
METHODS: We designed a model using both symbolic general knowledge extracted from the Unified Medical Language System (UMLS) and statistical knowledge extracted from a domain of application. Using statistical knowledge allowed us to contextualize the general knowledge for every particular situation. For each document studied, the extracted terms are ranked to highlight the most significant ones. The model was tested on a set of 17,079 French standardized discharge summaries (SDSs).
RESULTS: The most important ICD-10 term of each SDS was ranked 1st or 2nd by the method in nearly 90% of the cases.
CONCLUSIONS: The use of several terminologies leads to more precise indexing. The improvement achieved in the models implementation performances as a result of using semantic relationships is encouraging.

Entities:  

Mesh:

Year:  2007        PMID: 18693792      PMCID: PMC2655916     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  18 in total

1.  MeSHmap: a text mining tool for MEDLINE.

Authors:  P Srinivasan
Journal:  Proc AMIA Symp       Date:  2001

2.  Aggregating UMLS semantic types for reducing conceptual complexity.

Authors:  A T McCray; A Burgun; O Bodenreider
Journal:  Stud Health Technol Inform       Date:  2001

3.  Methods for exploring the semantics of the relationships between co-occurring UMLS concepts.

Authors:  A Burgun; O Bodenreider
Journal:  Stud Health Technol Inform       Date:  2001

4.  Exploring semantic groups through visual approaches.

Authors:  Olivier Bodenreider; Alexa T McCray
Journal:  J Biomed Inform       Date:  2003-12       Impact factor: 6.317

5.  The dimensions of indexing.

Authors:  W John Wilbur; Won Kim
Journal:  AMIA Annu Symp Proc       Date:  2003

6.  VUMeF: extending the French involvement in the UMLS Metathesaurus.

Authors:  S J Darmoni; E Jarrousse; P Zweigenbaum; P Le Beux; F Namer; R Baud; M Joubert; H Vallée; R A Côté; A Buemi; D Bourigault; G Recource; S Jeanneau; J M Rodrigues
Journal:  AMIA Annu Symp Proc       Date:  2003

7.  A pilot study of contextual UMLS indexing to improve the precision of concept-based representation in XML-structured clinical radiology reports.

Authors:  Yang Huang; Henry J Lowe; William R Hersh
Journal:  J Am Med Inform Assoc       Date:  2003-08-04       Impact factor: 4.497

8.  The NLM Indexing Initiative's Medical Text Indexer.

Authors:  Alan R Aronson; James G Mork; Clifford W Gay; Susanne M Humphrey; Willie J Rogers
Journal:  Stud Health Technol Inform       Date:  2004

9.  SAPHIRE--an information retrieval system featuring concept matching, automatic indexing, probabilistic retrieval, and hierarchical relationships.

Authors:  W R Hersh; R A Greenes
Journal:  Comput Biomed Res       Date:  1990-10

10.  Automatic text analysis.

Authors:  G Salton
Journal:  Science       Date:  1970-04-17       Impact factor: 47.728

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