Literature DB >> 18690655

Solution structure of a functional biomimetic and mechanistic implications for nickel superoxide dismutases.

Matthias Schmidt1, Stefan Zahn, Michela Carella, Oliver Ohlenschläger, Matthias Görlach, Erika Kothe, James Weston.   

Abstract

The nickel complex of a synthetic nonapeptide (HCDLPCFVY-NH2) is capable of catalytically disproportionating O2(.-) and is thus a functional biomimetic for nickel superoxide dismutases. This represents a simplification as compared to a NiSOD "maquette" that is based on a dodecapeptide that was recently reported [Inorg. Chem. 2006, 45, 2358]. The 3D solution structure reveals that the first six residues form a stable macrocyclic structure with a preformed binding site for Ni(II). Proline 5 exhibits a trans peptide linkage in the biomimetic and a cis conformation in NiSOD enzymes. DFT calculations reveal the source of this preference. Mechanistic consequences for the mode of action (identity of the fifth ligand) are discussed. The SOD activity is compared to enzymatic systems, and selected modifications allowed the biomimetic to be reduced to a functional minimal motif of only six amino acids (ACAAPC-NH2).

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Year:  2008        PMID: 18690655     DOI: 10.1002/cbic.200800017

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  11 in total

1.  Dipeptide-based models of nickel superoxide dismutase: solvent effects highlight a critical role to Ni-S bonding and active site stabilization.

Authors:  Eric M Gale; Darin M Cowart; Robert A Scott; Todd C Harrop
Journal:  Inorg Chem       Date:  2011-09-20       Impact factor: 5.165

2.  Synchrotron radiation induced X-ray emission studies of the antioxidant mechanism of the organoselenium drug ebselen.

Authors:  Jade B Aitken; Peter A Lay; T T Hong Duong; Roshanak Aran; Paul K Witting; Hugh H Harris; Barry Lai; Stefan Vogt; Gregory I Giles
Journal:  J Biol Inorg Chem       Date:  2012-02-11       Impact factor: 3.358

3.  Bisamidate and mixed amine/amidate NiN2S2 complexes as models for nickel-containing acetyl coenzyme A synthase and superoxide dismutase: an experimental and computational study.

Authors:  Vaidyanathan Mathrubootham; Jason Thomas; Richard Staples; John McCraken; Jason Shearer; Eric L Hegg
Journal:  Inorg Chem       Date:  2010-06-21       Impact factor: 5.165

4.  Tridentate N(2)S ligand from 2,2'-dithiodibenzaldehyde and N,N-dimethylethylenediamine: Synthesis, structure, and characterization of a Ni(II) complex with relevance to Ni Superoxide Dismutase.

Authors:  Joshua R Zimmerman; Bradley W Smucker; Ryan P Dain; Michael J Vanstipdonk; David M Eichhorn
Journal:  Inorganica Chim Acta       Date:  2011-07-15       Impact factor: 2.545

5.  Novel tripeptide model of nickel superoxide dismutase.

Authors:  Mary E Krause; Amanda M Glass; Timothy A Jackson; Jennifer S Laurence
Journal:  Inorg Chem       Date:  2010-01-18       Impact factor: 5.165

6.  Embedding the Ni-SOD mimetic Ni-NCC within a polypeptide sequence alters the specificity of the reaction pathway.

Authors:  Mary E Krause; Amanda M Glass; Timothy A Jackson; Jennifer S Laurence
Journal:  Inorg Chem       Date:  2012-12-10       Impact factor: 5.165

7.  Use of a metallopeptide-based mimic provides evidence for a proton-coupled electron-transfer mechanism for superoxide reduction by nickel-containing superoxide dismutase.

Authors:  Jason Shearer
Journal:  Angew Chem Int Ed Engl       Date:  2013-01-22       Impact factor: 15.336

8.  Metallopeptide based mimics with substituted histidines approximate a key hydrogen bonding network in the metalloenzyme nickel superoxide dismutase.

Authors:  Jason Shearer; Kosh P Neupane; Paige E Callan
Journal:  Inorg Chem       Date:  2009-11-16       Impact factor: 5.165

9.  New insights into the mechanism of nickel superoxide degradation from studies of model peptides.

Authors:  Daniel Tietze; Jana Sartorius; Banabithi Koley Seth; Kevin Herr; Pascal Heimer; Diana Imhof; Doreen Mollenhauer; Gerd Buntkowsky
Journal:  Sci Rep       Date:  2017-12-08       Impact factor: 4.379

Review 10.  Nickel-based Enzyme Systems.

Authors:  Stephen W Ragsdale
Journal:  J Biol Chem       Date:  2009-04-10       Impact factor: 5.157

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