Literature DB >> 18674560

A statistical method for quantifying songbird phonology and syntax.

Wei Wu1, John A Thompson, Richard Bertram, Frank Johnson.   

Abstract

Songbirds are the preeminent animal model for understanding how the brain encodes and produces learned vocalizations. Here, we report a new statistical method, the Kullback-Leibler (K-L) distance, for analyzing vocal change over time. First, we use a computerized recording system to capture all song syllables produced by birds each day. Sound Analysis Pro software [Tchernichovski O, Nottebohm F, Ho CE, Pesaran B, Mitra PP. A procedure for an automated measurement of song similarity. Anim Behav 2000;59:1167-76] is then used to measure the duration of each syllable as well as four spectral features: pitch, entropy, frequency modulation, and pitch goodness. Next, two-dimensional scatter plots of each day of singing are created where syllable duration is on the x-axis and each of the spectral features is represented separately on the y-axis. Each point in the scatter plots represents one syllable and we regard these plots as random samples from a probability distribution. We then apply the standard information-theoretic quantity K-L distance to measure dissimilarity in phonology across days of singing. A variant of this procedure can also be used to analyze differences in syllable syntax.

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Mesh:

Year:  2008        PMID: 18674560      PMCID: PMC2569874          DOI: 10.1016/j.jneumeth.2008.06.033

Source DB:  PubMed          Journal:  J Neurosci Methods        ISSN: 0165-0270            Impact factor:   2.390


  29 in total

1.  Vocal memory and learning in adult Bengalese Finches with regenerated hair cells.

Authors:  Sarah M N Woolley; Edwin W Rubel
Journal:  J Neurosci       Date:  2002-09-01       Impact factor: 6.167

2.  Juvenile zebra finches can use multiple strategies to learn the same song.

Authors:  Wan-chun Liu; Timothy J Gardner; Fernando Nottebohm
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-17       Impact factor: 11.205

3.  Developmental modulation of the temporal relationship between brain and behavior.

Authors:  Shane R Crandall; Naoya Aoki; Teresa A Nick
Journal:  J Neurophysiol       Date:  2006-11-01       Impact factor: 2.714

4.  Auditory-dependent vocal recovery in adult male zebra finches is facilitated by lesion of a forebrain pathway that includes the basal ganglia.

Authors:  John A Thompson; Wei Wu; Richard Bertram; Frank Johnson
Journal:  J Neurosci       Date:  2007-11-07       Impact factor: 6.167

5.  Hemispheric coordination is necessary for song production in adult birds: implications for a dual role for forebrain nuclei in vocal motor control.

Authors:  Robin C Ashmore; Mark Bourjaily; Marc F Schmidt
Journal:  J Neurophysiol       Date:  2007-10-31       Impact factor: 2.714

6.  Role of the midbrain dopaminergic system in modulation of vocal brain activation by social context.

Authors:  Erina Hara; Lubica Kubikova; Neal A Hessler; Erich D Jarvis
Journal:  Eur J Neurosci       Date:  2007-06       Impact factor: 3.386

7.  Bilateral LMAN lesions cancel differences in HVC neuronal recruitment induced by unilateral syringeal denervation. Lateral magnocellular nucleus of the anterior neostriatum.

Authors:  L Wilbrecht; T Petersen; F Nottebohm
Journal:  J Comp Physiol A Neuroethol Sens Neural Behav Physiol       Date:  2002-11-13       Impact factor: 1.836

8.  Real-time contributions of auditory feedback to avian vocal motor control.

Authors:  Jon T Sakata; Michael S Brainard
Journal:  J Neurosci       Date:  2006-09-20       Impact factor: 6.167

9.  Acute injections of brain-derived neurotrophic factor in a vocal premotor nucleus reversibly disrupt adult birdsong stability and trigger syllable deletion.

Authors:  J Matthew Kittelberger; Richard Mooney
Journal:  J Neurobiol       Date:  2005-03

10.  Vocal experimentation in the juvenile songbird requires a basal ganglia circuit.

Authors:  Bence P Olveczky; Aaron S Andalman; Michale S Fee
Journal:  PLoS Biol       Date:  2005-03-29       Impact factor: 8.029

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  11 in total

1.  Independent premotor encoding of the sequence and structure of birdsong in avian cortex.

Authors:  Mark J Basista; Kevin C Elliott; Wei Wu; Richard L Hyson; Richard Bertram; Frank Johnson
Journal:  J Neurosci       Date:  2014-12-10       Impact factor: 6.167

2.  Dual pre-motor contribution to songbird syllable variation.

Authors:  John A Thompson; Mark J Basista; Wei Wu; Richard Bertram; Frank Johnson
Journal:  J Neurosci       Date:  2011-01-05       Impact factor: 6.167

3.  Corticobasal ganglia projecting neurons are required for juvenile vocal learning but not for adult vocal plasticity in songbirds.

Authors:  Miguel Sánchez-Valpuesta; Yumeno Suzuki; Yukino Shibata; Noriyuki Toji; Yu Ji; Nasiba Afrin; Chinweike Norman Asogwa; Ippei Kojima; Daisuke Mizuguchi; Satoshi Kojima; Kazuo Okanoya; Haruo Okado; Kenta Kobayashi; Kazuhiro Wada
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-21       Impact factor: 11.205

4.  Axial organization of a brain region that sequences a learned pattern of behavior.

Authors:  Tiffanie R Stauffer; Kevin C Elliott; Matthew T Ross; Mark J Basista; Richard L Hyson; Frank Johnson
Journal:  J Neurosci       Date:  2012-07-04       Impact factor: 6.167

5.  Disconnection of a basal ganglia circuit in juvenile songbirds attenuates the spectral differentiation of song syllables.

Authors:  Kevin C Elliott; Wei Wu; Richard Bertram; Frank Johnson
Journal:  Dev Neurobiol       Date:  2013-12-14       Impact factor: 3.964

6.  HTR2 receptors in a songbird premotor cortical-like area modulate spectral characteristics of zebra finch song.

Authors:  William E Wood; Thomas K Roseberry; David J Perkel
Journal:  J Neurosci       Date:  2013-02-13       Impact factor: 6.167

7.  Time course of changes in Gambel's white-crowned sparrow song behavior following transitions in breeding condition.

Authors:  John Meitzen; Christopher K Thompson; Heejung Choi; David J Perkel; Eliot A Brenowitz
Journal:  Horm Behav       Date:  2008-11-01       Impact factor: 3.587

8.  Complex sequencing rules of birdsong can be explained by simple hidden Markov processes.

Authors:  Kentaro Katahira; Kenta Suzuki; Kazuo Okanoya; Masato Okada
Journal:  PLoS One       Date:  2011-09-07       Impact factor: 3.240

9.  VoICE: A semi-automated pipeline for standardizing vocal analysis across models.

Authors:  Zachary D Burkett; Nancy F Day; Olga Peñagarikano; Daniel H Geschwind; Stephanie A White
Journal:  Sci Rep       Date:  2015-05-28       Impact factor: 4.379

10.  A daily oscillation in the fundamental frequency and amplitude of harmonic syllables of zebra finch song.

Authors:  William E Wood; Peter J Osseward; Thomas K Roseberry; David J Perkel
Journal:  PLoS One       Date:  2013-12-02       Impact factor: 3.240

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