Literature DB >> 18662224

Population genomics: a new generation of genome scans to bridge the gap with functional genomics.

Aurélie Bonin1.   

Abstract

Population genomics is an increasingly popular approach to investigate the genetic basis of adaptation and speciation at the genome scale. However, it has so far largely failed to go beyond the mere identification of anonymous markers displaying selection signatures. Will population genomics ever be up to our expectations and able to really pinpoint genes underlying adaptation and speciation processes? In this issue of Molecular Ecology, Namroud et al. use population genomics to investigate local adaptation in natural populations of a conifer tree, the white spruce (Picea glauca). They show how population and functional genomics can finally converge with the deployment of the next generation of genome scans, which target gene-rich regions rather than the whole genome.

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Year:  2008        PMID: 18662224     DOI: 10.1111/j.1365-294X.2008.03854.x

Source DB:  PubMed          Journal:  Mol Ecol        ISSN: 0962-1083            Impact factor:   6.185


  20 in total

1.  Novel tools for an old lineage: Population genomics for cycads.

Authors:  Angelica Cibrián-Jaramillo; Thomas E Marler
Journal:  Commun Integr Biol       Date:  2011-07-01

2.  Harnessing genomics for delineating conservation units.

Authors:  W Chris Funk; John K McKay; Paul A Hohenlohe; Fred W Allendorf
Journal:  Trends Ecol Evol       Date:  2012-06-21       Impact factor: 17.712

3.  Evolution of stickleback in 50 years on earthquake-uplifted islands.

Authors:  Emily A Lescak; Susan L Bassham; Julian Catchen; Ofer Gelmond; Mary L Sherbick; Frank A von Hippel; William A Cresko
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-14       Impact factor: 11.205

4.  Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes.

Authors:  Paul A Hohenlohe; Susan Bassham; Mark Currey; William A Cresko
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2012-02-05       Impact factor: 6.237

5.  Utility of sequenced genomes for microsatellite marker development in non-model organisms: a case study of functionally important genes in nine-spined sticklebacks (Pungitius pungitius).

Authors:  Takahito Shikano; Jetty Ramadevi; Yukinori Shimada; Juha Merilä
Journal:  BMC Genomics       Date:  2010-05-27       Impact factor: 3.969

6.  Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags.

Authors:  Paul A Hohenlohe; Susan Bassham; Paul D Etter; Nicholas Stiffler; Eric A Johnson; William A Cresko
Journal:  PLoS Genet       Date:  2010-02-26       Impact factor: 5.917

7.  The population structure and recent colonization history of Oregon threespine stickleback determined using restriction-site associated DNA-sequencing.

Authors:  Julian Catchen; Susan Bassham; Taylor Wilson; Mark Currey; Conor O'Brien; Quick Yeates; William A Cresko
Journal:  Mol Ecol       Date:  2013-06       Impact factor: 6.185

8.  Stacks: an analysis tool set for population genomics.

Authors:  Julian Catchen; Paul A Hohenlohe; Susan Bassham; Angel Amores; William A Cresko
Journal:  Mol Ecol       Date:  2013-05-24       Impact factor: 6.185

9.  Signatures of positive selection and local adaptation to urbanization in white-footed mice (Peromyscus leucopus).

Authors:  Stephen E Harris; Jason Munshi-South
Journal:  Mol Ecol       Date:  2017-10-26       Impact factor: 6.185

10.  Genomic signatures of local directional selection in a high gene flow marine organism; the Atlantic cod (Gadus morhua).

Authors:  Einar E Nielsen; Jakob Hemmer-Hansen; Nina A Poulsen; Volker Loeschcke; Thomas Moen; Torild Johansen; Christian Mittelholzer; Geir-Lasse Taranger; Rob Ogden; Gary R Carvalho
Journal:  BMC Evol Biol       Date:  2009-12-01       Impact factor: 3.260

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