Literature DB >> 18657509

RNA repair: an antidote to cytotoxic eukaryal RNA damage.

Jayakrishnan Nandakumar1, Beate Schwer, Raffael Schaffrath, Stewart Shuman.   

Abstract

RNA healing and sealing enzymes drive informational and stress response pathways entailing repair of programmed 2',3' cyclic PO(4)/5'-OH breaks. Fungal, plant, and phage tRNA ligases use different strategies to discriminate the purposefully broken ends of the anticodon loop. Whereas phage ligase recognizes the tRNA fold, yeast and plant ligases do not and are instead hardwired to seal only the tRNA 3'-OH, 2'-PO(4) ends formed by healing of a cyclic phosphate. tRNA anticodon damage inflicted by secreted ribotoxins such as fungal gamma-toxin underlies a rudimentary innate immune system. Yeast cells are susceptible to gamma-toxin because the sealing domain of yeast tRNA ligase is unable to rectify a break at the modified wobble base of tRNA(Glu(UUC)). Plant andphage tRNA repair enzymes protect yeast from gamma-toxin because they are able to reverse the damage. Our studies underscore how a ribotoxin exploits an Achilles' heel in the target cell's tRNA repair system.

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Year:  2008        PMID: 18657509      PMCID: PMC3289999          DOI: 10.1016/j.molcel.2008.05.019

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  38 in total

1.  Entry into cells and selective degradation of tRNAs by a cytotoxic member of the RNase A family.

Authors:  Shailendra K Saxena; Ravi Sirdeshmukh; Wojciech Ardelt; Stanislaw M Mikulski; Kuslima Shogen; Richard J Youle
Journal:  J Biol Chem       Date:  2002-02-11       Impact factor: 5.157

2.  Portability and fidelity of RNA-repair systems.

Authors:  Beate Schwer; Rana Sawaya; C Kiong Ho; Stewart Shuman
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-18       Impact factor: 11.205

3.  Saccharomyces cerevisiae Elongator mutations confer resistance to the Kluyveromyces lactis zymocin.

Authors:  F Frohloff; L Fichtner; D Jablonowski; K D Breunig; R Schaffrath
Journal:  EMBO J       Date:  2001-04-17       Impact factor: 11.598

4.  RNA cleavage and inhibition of protein synthesis by bleomycin.

Authors:  Anil T Abraham; Jih-Jing Lin; Dianne L Newton; Susanna Rybak; Sidney M Hecht
Journal:  Chem Biol       Date:  2003-01

5.  Genetic and biochemical analysis of the functional domains of yeast tRNA ligase.

Authors:  Rana Sawaya; Beate Schwer; Stewart Shuman
Journal:  J Biol Chem       Date:  2003-08-21       Impact factor: 5.157

6.  Intracellular expression of Kluyveromyces lactis toxin gamma subunit mimics treatment with exogenous toxin and distinguishes two classes of toxin-resistant mutant.

Authors:  A R Butler; M Porter; M J Stark
Journal:  Yeast       Date:  1991 Aug-Sep       Impact factor: 3.239

7.  Structural inhibition of the colicin D tRNase by the tRNA-mimicking immunity protein.

Authors:  Marc Graille; Liliana Mora; Richard H Buckingham; Herman van Tilbeurgh; Miklos de Zamaroczy
Journal:  EMBO J       Date:  2004-03-11       Impact factor: 11.598

8.  Novel methyltransferase for modified uridine residues at the wobble position of tRNA.

Authors:  Hamid R Kalhor; Steven Clarke
Journal:  Mol Cell Biol       Date:  2003-12       Impact factor: 4.272

9.  Bacteriophage T4 anticodon nuclease, polynucleotide kinase and RNA ligase reprocess the host lysine tRNA.

Authors:  M Amitsur; R Levitz; G Kaufmann
Journal:  EMBO J       Date:  1987-08       Impact factor: 11.598

10.  The killer toxin of Kluyveromyces lactis: characterization of the toxin subunits and identification of the genes which encode them.

Authors:  M J Stark; A Boyd
Journal:  EMBO J       Date:  1986-08       Impact factor: 11.598

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  49 in total

1.  Probing the substrate specificity of the bacterial Pnkp/Hen1 RNA repair system using synthetic RNAs.

Authors:  Can Zhang; Chio Mui Chan; Pei Wang; Raven H Huang
Journal:  RNA       Date:  2011-12-21       Impact factor: 4.942

2.  Novel mechanism of RNA repair by RtcB via sequential 2',3'-cyclic phosphodiesterase and 3'-Phosphate/5'-hydroxyl ligation reactions.

Authors:  Naoko Tanaka; Anupam K Chakravarty; Bill Maughan; Stewart Shuman
Journal:  J Biol Chem       Date:  2011-10-31       Impact factor: 5.157

3.  The adenylyltransferase domain of bacterial Pnkp defines a unique RNA ligase family.

Authors:  Paul Smith; Li Kai Wang; Pravin A Nair; Stewart Shuman
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-27       Impact factor: 11.205

4.  RNA ligase RtcB splices 3'-phosphate and 5'-OH ends via covalent RtcB-(histidinyl)-GMP and polynucleotide-(3')pp(5')G intermediates.

Authors:  Anupam K Chakravarty; Roman Subbotin; Brian T Chait; Stewart Shuman
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-02       Impact factor: 11.205

Review 5.  tRNA biology charges to the front.

Authors:  Eric M Phizicky; Anita K Hopper
Journal:  Genes Dev       Date:  2010-09-01       Impact factor: 11.361

6.  Active site mapping and substrate specificity of bacterial Hen1, a manganese-dependent 3' terminal RNA ribose 2'O-methyltransferase.

Authors:  Ruchi Jain; Stewart Shuman
Journal:  RNA       Date:  2011-01-04       Impact factor: 4.942

Review 7.  Current perspectives on the clinical implications of oxidative RNA damage in aging research: challenges and opportunities.

Authors:  Zhijie Xu; Jinzhou Huang; Ming Gao; Guijie Guo; Shuangshuang Zeng; Xi Chen; Xiang Wang; Zhicheng Gong; Yuanliang Yan
Journal:  Geroscience       Date:  2020-06-11       Impact factor: 7.713

8.  RtcB, a novel RNA ligase, can catalyze tRNA splicing and HAC1 mRNA splicing in vivo.

Authors:  Naoko Tanaka; Birthe Meineke; Stewart Shuman
Journal:  J Biol Chem       Date:  2011-07-11       Impact factor: 5.157

9.  Characterization of a thermostable archaeal polynucleotide kinase homologous to human Clp1.

Authors:  Ruchi Jain; Stewart Shuman
Journal:  RNA       Date:  2009-03-19       Impact factor: 4.942

10.  Molecular basis of bacterial protein Hen1 activating the ligase activity of bacterial protein Pnkp for RNA repair.

Authors:  Pei Wang; Chio Mui Chan; David Christensen; Can Zhang; Kiruthika Selvadurai; Raven H Huang
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-30       Impact factor: 11.205

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