Although many stimuli activate extracellular signal-regulated kinases 1 and 2 (ERK1/2), the kinetics and compartmentalization of ERK1/2 signals are stimulus-dependent and dictate physiological consequences. ERKs can be inactivated by dual specificity phosphatases (DUSPs), notably the MAPK phosphatases (MKPs) and atypical DUSPs, that can both dephosphorylate and scaffold ERK1/2. Using a cell imaging model (based on knockdown of endogenous ERKs and add-back of wild-type or mutated ERK2-GFP reporters), we explored possible effects of DUSPs on responses to transient or sustained ERK2 activators (epidermal growth factor and phorbol 12,13-dibutyrate, respectively). For both stimuli, a D319N mutation (which impairs DUSP binding) increased ERK2 activity and reduced nuclear accumulation. These stimuli also increased mRNA levels for eight DUSPs. In a short inhibitory RNA screen, 12 of 16 DUSPs influenced ERK2 responses. These effects were evident among nuclear inducible MKP, cytoplasmic ERK MKP, JNK/p38 MKP, and atypical DUSP subtypes and, with the exception of the nuclear inducible MKPs, were paralleled by corresponding changes in Egr-1 luciferase activation. Simultaneous removal of all JNK/p38 MKPs or nuclear inducible MKPs revealed them as positive and negative regulators of ERK2 signaling, respectively. The effects of JNK/p38 MKP short inhibitory RNAs were not dependent on protein neosynthesis but were reversed in the presence of JNK and p38 kinase inhibitors, indicating DUSP-mediated cross-talk between MAPK pathways. Overall, our data reveal that a large number of DUSPs influence ERK2 signaling. Together with the known tissue-specific expression of DUSPs and the importance of ERK1/2 in cell regulation, our data support the potential value of DUSPs as targets for drug therapy.
Although many stimuli activate extracellular signal-regulated kinases 1 and 2 (ERK1/2), the kinetics and compartmentalization of ERK1/2 signals are stimulus-dependent and dictate physiological consequences. ERKs can be inactivated by dual specificity phosphatases (DUSPs), notably the MAPK phosphatases (MKPs) and atypical DUSPs, that can both dephosphorylate and scaffold ERK1/2. Using a cell imaging model (based on knockdown of endogenous ERKs and add-back of wild-type or mutated ERK2-GFP reporters), we explored possible effects of DUSPs on responses to transient or sustained ERK2 activators (epidermal growth factor and phorbol 12,13-dibutyrate, respectively). For both stimuli, a D319N mutation (which impairs DUSP binding) increased ERK2 activity and reduced nuclear accumulation. These stimuli also increased mRNA levels for eight DUSPs. In a short inhibitory RNA screen, 12 of 16 DUSPs influenced ERK2 responses. These effects were evident among nuclear inducible MKP, cytoplasmic ERK MKP, JNK/p38 MKP, and atypical DUSP subtypes and, with the exception of the nuclear inducible MKPs, were paralleled by corresponding changes in Egr-1 luciferase activation. Simultaneous removal of all JNK/p38 MKPs or nuclear inducible MKPs revealed them as positive and negative regulators of ERK2 signaling, respectively. The effects of JNK/p38 MKP short inhibitory RNAs were not dependent on protein neosynthesis but were reversed in the presence of JNK and p38 kinase inhibitors, indicating DUSP-mediated cross-talk between MAPK pathways. Overall, our data reveal that a large number of DUSPs influence ERK2 signaling. Together with the known tissue-specific expression of DUSPs and the importance of ERK1/2 in cell regulation, our data support the potential value of DUSPs as targets for drug therapy.
The extracellular signal-regulated kinase 1/2
(ERK1/2)2 pathway
forms a major part of the mitogen-activated protein kinase (MAPK) network and
is activated by a diverse array of extracellular cues
(1–3).
Activated ERK1/2 can phosphorylate a growing list of substrate proteins in the
nucleus and cytoplasm and represents a focal point of integration in cellular
responses
(1–3).
The specificity of biological outcome from ERK1/2 stimuli is apparently
achieved through tight control of the duration, magnitude, and localization of
ERK1/2 signals (2,
3).Activation of ERK1/2 commonly causes its translocation from the cytoplasm
to the nucleus, which is necessary for the expression of many immediate early
gene products such as c-Fos, c-Jun, and early growth response gene-1 product
(Egr-1)
(4–8).
In fibroblasts and epithelial cells, sustained ERK1/2 activity causes
expression and stabilization of immediate early gene products, culminating in
G1/S transition
(6–9).
This does not occur in cells where nuclear localization of ERK1/2 is prevented
(10). In contrast, transient
ERK1/2 signals similarly cause the transcription of immediate early genes, but
this is not sustained, and the protein products are rapidly degraded
(6–8).
Thus, both the signal duration and localization of ERK1/2 determine cell
fate.The dual specificity phosphatases (DUSPs) are an important family of
proteins that influence spatiotemporal aspects of ERK1/2 signaling. Two major
groups in this family are the MAPK phosphatases (MKPs) and the highly related
atypical DUSPs (11,
12). The MKP group consists of
10 proteins that can remove activating Thr and Tyr phosphate groups from
ERK1/2 and/or the other major MAPKs, c-Jun N-terminal kinase (JNK) and p38,
and thus act in direct opposition to activating signals from upstream kinases
(13,
14). The MKPs are
characterized by their variable N-terminal MAPK binding region that governs
substrate specificity and stability of interaction
(14–18).
This region includes the docking (D)-domain motif and can determine whether
DUSPs remain associated with ERK1/2 following dephosphorylation
(16–19).
The MKPs are further divided into subgroups according to subcellular
localization and substrate specificity. DUSP1, -2, -4, and -5 constitute the
nuclear inducible MKPs, all of which are able to dephosphorylate ERK1/2 and,
with the exception of DUSP5, can also dephosphorylate JNK and/or p38
(18,
20–22).
DUSP6, -7, and -9 preferentially dephosphorylate ERK1/2, are not restricted to
the nucleus, and are termed the cytoplasmic ERK MKPs
(23–25).
DUSP8, -10, and -16 have greater activity toward JNK and/or p38 and are known
as the JNK/p38 MKPs
(26–28).
In contrast, the atypical DUSPs are smaller, lack obvious MAPK targeting
motifs, and dephosphorylate a diverse group of substrates
(11,
12). However, members of this
group are known to act directly on MAPK family members. Notably, DUSP3
dephosphorylates ERK1/2 (29,
30), whereas DUSP18 and -22
dephosphorylate JNK or its upstream activators
(31–33).
A recent genome-wide phosphatase screen revealed that a number of DUSPs are
essential for cell survival
(34). These include DUSPs that
can directly dephosphorylate ERKs, highlighting the potential value of DUSP
targeting as a means to control ERK1/2 activity and cell fate
(35–38).We recently began to explore spatiotemporal aspects of ERK2 activation
using a high content imaging-based model in which endogenous ERKs are knocked
down with siRNAs and a GFP fusion protein reporter is added back with
recombinant adenovirus (Ad) expressing wild-type (WT) ERK2-GFP or a similar
construct mutated to prevent D-domain binding. We showed that ERK2
dephosphorylation and trafficking are coordinately regulated by DUSP1, -2, and
-4 in a stimulus-specific manner and that whereas DUSP2 and -4 dephosphorylate
and scaffold ERK2 in the nucleus, DUSP1 dephosphorylates ERK2 and releases it
for return to the cytoplasm
(19). Here we have used this
model to explore possible effects of other DUSP family members on ERK
responses to transient or sustained ERK activators (EGF and PDBu,
respectively). We show that a surprisingly large number of these enzymes (12
of 16 in an siRNA screen) are able to shape ERK2 responses. These include
members of each DUSP subgroup. The effects of the siRNAs were
stimulus-specific and were mostly inhibitory. For most DUSPs, the reduction in
ERK2 activity and/or nuclear localization was paralleled by decreases in
ERK-dependent transcription, but this was not the case for the nuclear
inducible MKPs. When all four members of the nuclear inducible MKP subgroup
were knocked out simultaneously, levels of ERK2-GFP in the nucleus were
decreased, whereas both active nuclear ERK2 levels and ERK-dependent
transcription were greatly increased. In contrast, targeting of JNK/p38 MKPs
reduced ERK2 activation, ERK2-GFP nuclear accumulation, and ERK-dependent
transcription. These siRNA effects were prevented by pharmacological JNK or
p38 kinase inhibitors, indicating the JNK/p38 MKP siRNA effects were mediated
by JNK/p38 activation. These data indicate opposing collective functional
roles of the nuclear inducible MKPs and JNK/p38 MKPs during ERK2
regulation.
EXPERIMENTAL PROCEDURES
Engineering of Plasmids and Viruses—Adenoviral (Ad) shuttle
vectors of WT, Y261A, and D319NERK2-GFP in pacAd5 CMV K-N pA were constructed
as described (19). A 1.2-kb
SalI fragment of the murineegr-1 promoter from an Egr-1-Luc vector
(39) was subcloned into an
XhoI digest of pAd5-Luc2 (made initially by subcloning an SspI-BamHI fragment
of pGL4.17 into pacAd5 K-N pA). Viruses were generated from shuttle vectors as
described (40). Briefly, 4.5
μg of shuttle vectors were digested alongside 1.5 μg of pacAd5
9.2–100 sub360 backbone vector (donated by Prof. Beverly Davidson,
University of Iowa, Iowa City) with PacI. Cut shuttle and backbone vectors
were then mixed and transfected into low passage HEK293 cells using Superfect
(Qiagen, Crawley, UK). Cells were left to allow recombination between shuttle
and backbone vectors. Verification of recombination was performed by
restriction digest and sequence analysis, and Ad vectors were grown to high
titer and purified according to standard protocols
(41). The Ad CMV
β-galactosidase vector was a gift from Prof. James Uney (University of
Bristol, UK).Cell Culture and Transfection—HeLa cells were cultured in
10% FCS-supplemented Dulbecco's modified Eagle's medium (DMEM). For 96-well
plate experiments, cells were transfected with 1 nm nontargeting
control siRNAs or siRNAs targeted to noncoding regions of ERK1/2 as described
(19,
42). For DUSP siRNA
transfection, 10 nm SMARTpool or nontargeting control siRNA
mixtures (Dharmacon, Cramlington, UK) were included in transfections. Sixteen
hours after siRNA transfection, cells were transduced with 2 ×
106 plaque-forming units/ml Ad WT or D319NERK2-GFP vector in DMEM
with 10% FCS. For luciferase assays, Ad Egr-1-luciferase and Ad CMV
β-galactosidase vectors were included at 1 × 106
plaque-forming units/ml. The Ad-containing medium was removed after 4–6
h and replaced with fresh DMEM supplemented with 0.1% FCS. The cells were then
maintained for 16–24 h in culture prior to stimulation with EGF
(Calbiochem) or PDBu (Sigma). In inhibitor studies, cells were pretreated for
30 min with 10 μm SP600125 (Ascent Scientific,
Weston-super-Mare, UK), 20 μm SB203580 (Calbiochem), or 30
μm cycloheximide (Sigma). Expression levels of GFP-tagged
fusions were compared by Western blotting (Ref.
9, see also supplemental Fig.
1) as well as comparison of mean cell fluorescence in microscopy assays (as
demonstrated in Fig.
2).
FIGURE 2.
Influence of D-domains on the potency of ERK2 signaling. Cells
transfected with ERK1/2 siRNAs were transduced with Ad wild-type (WT)
or D319N-mutated ERK2-GFP and analyzed for activation, localization, and
transcriptional activation as follows. A–C, cells were
stimulated in 96-well plates with the indicated concentrations of EGF for 5
min and stained before image acquisition and analysis (as described in
Fig. 1) for the calculation of
whole-cell ppERK2 intensity (A), the ERK2-GFP N:C ratio (B),
and whole-cell ERK2-GFP (N+C) levels (C). D, cells were
additionally transduced with Ad Egr-1 luciferase and Ad
CMVβ-galactosidasevectorsbeforestimulationwithindicatedconcentrationsof
EGF for 6 h and prior to lysis and luciferase assay (as described in
Fig. 1) for the assessment of
egr-1 promoter activity. Data shown were obtained from three separate
experiments, each with duplicate wells (mean± S.E., n = 3).
* = p < 0.05 and ** = p < 0.01,
comparing WT with D319N conditions, according to two-way ANOVA and Bonferroni
post hoc tests.
Western Blotting—HeLa cells were simultaneously plated and
transfected in 6-well plates (2.5 × 105 cells/well) with 1
nm ERK1/2 siRNAs and 10 nm control or SMARTpool siRNAs
prior to Ad transduction as above. Following treatment noted in figure
legends, cells were lysed as described
(19,
41), prior to Western
blotting. Total and ppERK1/2 were detected using polyclonal rabbit anti-total
ERK1/2 and rabbit anti-ppERK1/2 (1:1000; Cell Signaling Technology, Hitchin,
UK), respectively. Loading controls were assayed by staining parallel blots
with mouse anti-α-tubulin (Sigma).Quantitative PCR—HeLa cells were simultaneously plated and
transfected in 6-well plates (2.5 × 105 cells/well) with 1
nm ERK1/2 siRNAs and 10 nm control or SMARTpool siRNAs
prior to Ad transduction as described above. Cells were either kept in 10% FCS
DMEM or kept in reduced serum media prior to stimulation with 10 nm
EGF or 1 μm PDBu. Extraction of total RNA was performed using an
RNeasy kit according to the manufacturer's instructions (Qiagen).
Contaminating genomic DNA was removed from columns using an additional DNase
(Qiagen) digestion step. Complementary DNA was then prepared for 1 μg of
each total RNA sample using a cloned avian myeloblastosis virus first-strand
synthesis kit according to the manufacturer's instructions (Invitrogen). cDNAs
were then quantified relative to expression of human GTPase-activating protein
using the following primers: human GTPase-activating protein, 5′-GGG AAG
GTG AAG GTC GGA GT-3′ and 5′-GAG TTA AAA GCA GCC CTG GTG
A-3′; DUSP1, 5′-CAA CGA GGC CAT TGA CTT CAT AG-3′ and
5′-CAA ACA CCC TTC CTC CAG CA-3′; DUSP2, 5′-AAA ACC AGC CGC
TCC GAC-3′ and 5′-CCA GGA ACA GGT AGG GCA AG-3′; DUSP3,
5′-GCG CTT ACT TTG AAA GGG CTG-3′ and 5′-TGC CGC ATC ATG AGG
TAG G-3′; DUSP4, 5′-CTG GTT CAT GGA AGC CAT AGA GT-3′ and
5′-CGC CCA CGG CAG TCC-3′; DUSP5, 5′-CCG CGG GTC TAC TTC CTC
A-3′ and 5′-GGG TTT TAC ATC CAC GCA ACA-3′; DUSP6,
5′-CTG CCG GGC GTT CTA CCT-3′ and 5′-CCA GCC AAG CAA TGT ACC
AAG-3′; DUSP7, 5′-GTG CTC GGC CTG CTC CT-3′ and 5′-GAA
GAG CTG TCC ACG TTG GTC-3′; DUSP8, 5′-GCA TCC TGC CTC ACC TCT
ACC-3′ and 5′-CCA TTT TGC GTC ATC AGA TCC-3′; DUSP9,
5′-CTG CTG CAG AAG CTG CGA-3′ and 5′-CCT GGA ATC TGC TGA AGC
CT-3′; DUSP10, 5′-GCC AGC CAC TGA CAG CAA C-3′ and
5′-TCC CAC ACT GGT GAG CTT CC-3′; DUSP11, 5′-AAG ACT ATC TCC
CAG TTG GAC AGC-3′ and 5′-GGA AAA GCA TTC TTC TGG AGC A-3′;
DUSP12, 5′-TGG AAT CTG CTT TGT TGG GAG-3′ and 5′-GAA GGA ACC
CAA CTT GGC ACT-3′; DUSP13, 5′-CAC ACT GAA CCA TAT CGA TGA
GG-3′ and 5′-AGC TGG ATC AGC TTG CTC TTG-3′; DUSP14,
5′-GAT CCG GAC CCA GGC AG-3′ and 5′-GGC GGC AAG ACC AGA
GTG-3′; DUSP15, 5′-CTA TCC ATG AGT CAC CCC AGC-3′ and
5′-GTG CTT TTT GAT GGG TAC CTC AG-3′; DUSP16, 5′-TCA CTG TAC
TTC TGG GTA AAC TGG AG-3′ and 5′-AAG GCT GAG AAA TGC AGG TAG
G-3′; DUSP18, 5′-CTC TCC CGA AGA ACC TTG CC-3′ and
5′-GTC AGC AGT CAG CGA AGC AC-3′; DUSP19, 5′-TGC AGG ACC TTA
GCT CGG AC-3′ and 5′-TGT ATC CAA ATC ATG AGC AGC ATC-3′;
DUSP21, 5′-GTC CAG CAA TCG CAT CAC C-3′ and 5′-CCC TCG AAG
AAT ACG TTG ACC A-3′; and DUSP22, 5′-CGC TAG CGT TCG CCT
TCA-3′ and 5′-GCT CAA TTG TTC CGC GTC TC-3′. PCR primers
were mixed with 50 ng of reverse transcription-PCR template and SYBR green PCR
master mix (Applied Biosystems, Warrington, UK), and the comparative
C method was used to detect relative expression curves on
an ABI PRISM 7500 detection system (Applied Biosystems).Semi-automated Image Acquisition and Analysis—Cells were
transfected with siRNA, transduced with Ad vectors, and plated as described
above on Costar plain black-wall 96-well plates (Corning Glass). Following
treatment with EGF or PDBu (and/or inhibitors), cells were washed in ice-cold
phosphate-buffered saline before fixation and staining for ppERK1/2 and
imaging as described (19).
Image acquisition in each well was performed on an IN Cell Analyzer 1000
microscope, using a ×10 objective (GE Healthcare). Analysis of ppERK1/2
staining and localization was performed using the Dual Area Object Analysis
algorithm in the IN Cell Analyzer work station (IN Cell Investigator, GE
Healthcare) using DAPI and ppERK1/2 images. ERK2-GFP localization and ppERK2
staining were simultaneously analyzed using the Multitarget Analysis algorithm
(IN Cell Investigator, GE Healthcare) using ERK2-GFP, ppERK2, and DAPI images
(ERK2-GFP and DAPI images were used to define whole-cell and nuclear regions,
respectively). Single cells expressing superphysiological levels of ERK2-GFP
were excluded from analysis (∼20% of cells) using appropriate gating
parameters to prevent misleading localization data
(19). 300–500 cells per
field were typically analyzed, and up to four fields per well were captured in
experiments performed in duplicate or quadruplicate, meaning that in each
experiment data were normally derived from at least 1000 individual cells per
time point. Imaging data are reported as ppERK2 intensity (mean fluorescence
intensity per cell) or as a ratio of nuclear to cytoplasmic intensity (N:C
ratio) of either ERK2-GFP or ppERK2 signal.Luciferase Assays—Cells were transfected with siRNA,
transduced with Ad vectors, and plated as described above on Costar plain
black-wall 96-well plates (Corning Glass), but including Ad Egr-1-luciferase
and Ad CMV β-galactosidase reporter vectors. Following treatment with EGF
or PDBu (and/or inhibitors), cells were washed in ice-cold phosphate-buffered
saline, lysed, and assessed for luciferase activity by chemical luminescence
following the addition of luciferin substrate (Promega, Southampton, UK).
β-Galactosidase activity was used to correct luciferase activity for
transduction efficiency, as measured following the addition of chlorophenol
red β-d-galactopyranoside substrate (Roche Applied
Science).
RESULTS AND DISCUSSION
Comparison of EGF and Protein Kinase C-induced ERK2
Responses—To examine the spatial and temporal aspects of ERK2
regulation, we have used siRNAs targeted to noncoding regions to knock down
endogenous ERK1/2 and recombinant Ad to restore ERK2 expression with fusion
proteins of WT or the phosphatase-resistant D319NERK2-GFP. When combined with
antibody staining for dually phosphorylated, active ERK1/2 (ppERK1/2) and a
DAPI stain to identify nuclear regions, this system allows direct monitoring
of both total and phosphorylated forms of ERK2-GFP in nuclear and cytoplasmic
compartments (Fig.
1). The key readouts from this assay are as follows: 1)
whole-cell ppERK2 intensity, which reflects ERK2 activation state irrespective
of scaffolding or localization; 2) ppERK2nuclear to cytoplasmic (N:C) ratio,
which indicates changes in the compartmentalization and scaffolding of active
ERK2; and 3) N:C distribution of ERK2-GFP, a readout for changes in ERK2
distribution irrespective of activation state. Combining these with an Egr-1
luciferase reporter assay (as a downstream readout for ERK1/2-dependent
transcriptional activation), we initially determined the effects of ERK1/2
siRNA transfection and transduction with Ad ERK2-GFP on responses to EGF and
the protein kinase C-activating phorbol ester, PDBu. In cells transfected with
control siRNAs, 5 min of stimulation with EGF caused robust and dose-dependent
increases of ppERK1/2 staining, and 6 h of stimulation caused induction of
Egr-1 transcription. Potencies (log EC50 values) were identical for
both end points (-10.3, see Fig.
1, left and right panels).
Transfection with ERK1/2 siRNAs had no effect on cell number or the expression
of α-tubulin in microscopy or Western blotting assays (supplemental Fig.
1) (19), but ERK1/2 expression
and maximal effect of EGF on ppERK1/2 and Egr-1 luciferase were reduced by
>85% (Fig. 1,
left and right panels, and supplemental Fig. 1). Subsequent
transduction with Ad ERK2-GFP restored ERK2 expression levels (as judged by
Western blotting for ERK1/2, see supplemental Fig. 1). It also restored the
whole-cell ppERK2 and Egr-1 luciferase responses, so that maximal responses to
EGF and log EC50 values were indistinguishable between cells
receiving control siRNAs and those receiving ERK1/2 siRNAs and Ad ERK2-GFP
together. Monitoring of the ERK2-GFP nuclear cytoplasmic (N:C) ratio revealed
that increases in ERK2-GFP nuclear distribution paralleled ppERK2 responses in
the same cells (Fig.
1, left and middle panels). Similar
profiles were seen in parallel experiments with PDBu, but with a log
EC50 of -6.3 (not shown).
FIGURE 1.
High content imaging methods for studying ERK1/2 regulation.
A, cells were transfected with ERK1/2 siRNAs and transduced with Ad
ERK2-GFP. Following treatment, cells were stained, and images were acquired
for DAPI, ERK2-GFP, and ppERK2 stains, as described under “Experimental
Procedures.” Top panels show whole fields of acquired images,
and bottom panels show blow-up images of areas denoted by white
squares. Outlines on lower panels denote the segmentation of
individual cells according to DAPI and ERK2-GFP intensity using Multitarget
Analysis software. Cells without outlines indicate cells excluded from
analysis either for expressing superphysiological levels of ERK2-GFP or
failing to meet other criteria needed for accurate segmentation.
Bars, 100 μm. B, cells were transfected with control
(Ctrl) siRNAs, ERK1/2 siRNAs, or ERK1/2 siRNAs as well as Ad ERK2-GFP
as indicated. Cells were stimulated for 5 min with indicated concentrations of
EGF before fixation, ppERK1/2 staining, image acquisition, and analysis as
described in A to assess whole-cell levels of ERK1/2 phosphorylation
(ppERK, left panel) and nucleocytoplasmic distribution of ERK2-GFP
(ERK2-GFP N:C, middle panel). For Egr-1 luciferase assays, Ad Egr-1
luciferase and Ad CMV β-galactosidase vectors were also added to cells
before stimulation with EGF for 6 h and assay of luciferase activity
(Egr-1 Luc), as described under “Experimental
Procedures,” and are expressed as fold change compared with unstimulated
conditions. C, cells were transfected with ERK1/2 siRNAs and
transduced with Ad ERK2-GFP (with or without Ad Egr-1 luciferase and Ad CMV
β-galactosidase), prior to stimulation with 10 nm EGF or 1
μm PDBu, as indicated, in time course studies. Cells were fixed
and assessed for ppERK2 levels (left panel) and ERK2-GFP N:C
localization (middle panel) simultaneously, or lysed and assayed for
luciferase activity (right panel) as described in B. Data
shown are from four separate experiments (mean ± S.E., n = 4).
** = p < 0.01, comparing PDBu and EGF-stimulated cells
using two-way ANOVA and Bonferroni post hoc tests.
High content imaging methods for studying ERK1/2 regulation.
A, cells were transfected with ERK1/2 siRNAs and transduced with Ad
ERK2-GFP. Following treatment, cells were stained, and images were acquired
for DAPI, ERK2-GFP, and ppERK2 stains, as described under “Experimental
Procedures.” Top panels show whole fields of acquired images,
and bottom panels show blow-up images of areas denoted by white
squares. Outlines on lower panels denote the segmentation of
individual cells according to DAPI and ERK2-GFP intensity using Multitarget
Analysis software. Cells without outlines indicate cells excluded from
analysis either for expressing superphysiological levels of ERK2-GFP or
failing to meet other criteria needed for accurate segmentation.
Bars, 100 μm. B, cells were transfected with control
(Ctrl) siRNAs, ERK1/2 siRNAs, or ERK1/2 siRNAs as well as Ad ERK2-GFP
as indicated. Cells were stimulated for 5 min with indicated concentrations of
EGF before fixation, ppERK1/2 staining, image acquisition, and analysis as
described in A to assess whole-cell levels of ERK1/2 phosphorylation
(ppERK, left panel) and nucleocytoplasmic distribution of ERK2-GFP
(ERK2-GFP N:C, middle panel). For Egr-1 luciferase assays, Ad Egr-1
luciferase and Ad CMV β-galactosidase vectors were also added to cells
before stimulation with EGF for 6 h and assay of luciferase activity
(Egr-1 Luc), as described under “Experimental
Procedures,” and are expressed as fold change compared with unstimulated
conditions. C, cells were transfected with ERK1/2 siRNAs and
transduced with Ad ERK2-GFP (with or without Ad Egr-1 luciferase and Ad CMV
β-galactosidase), prior to stimulation with 10 nm EGF or 1
μm PDBu, as indicated, in time course studies. Cells were fixed
and assessed for ppERK2 levels (left panel) and ERK2-GFP N:C
localization (middle panel) simultaneously, or lysed and assayed for
luciferase activity (right panel) as described in B. Data
shown are from four separate experiments (mean ± S.E., n = 4).
** = p < 0.01, comparing PDBu and EGF-stimulated cells
using two-way ANOVA and Bonferroni post hoc tests.We next used the knockdown and add-back system to define time courses of
EGF and PDBu treatment. EGF caused a rapid and transient increase in
whole-cell ppERK2 levels, which was paralleled by a transient relocalization
of ERK2-GFP to the nucleus in the same cells
(Fig. 1,
left and middle panels). EGF also mediated strong activation
of the Egr-1 luciferase reporter, peaking at approximately a 100-fold
induction over basal levels after 4–6 h of stimulation
(Fig. 1, right
panel). PDBu caused a comparably rapid ppERK2 response to that of EGF
(maximum at 5–15 min) with a subsequent reduction to ∼40% of peak
values for the remainder of the experiment
(Fig. 1, left
panel). PDBu also caused a similar rapid increase in N:C ERK2-GFP ratio
to EGF, but rather than paralleling the activation profile, ERK2-GFP nuclear
localization was sustained, peaking at 120 min
(Fig. 1, middle
panel). This echoes previous findings that transient ERK2 activation does
not mediate sustained nuclear accumulation of ERK2
(19,
43). In contrast, PDBu causes
sustained ERK2 activation as well as sustained nuclear localization of
dephosphorylated ERK2 (19)
(Fig. 3,
Fig. 5, and
Fig. 7). The more
sustained ppERK2 response to PDBu is associated with more pronounced
activation of Egr-1 luciferase. These responses reached ∼240-fold
induction after 6 h of stimulation, almost 2.5 times higher that that induced
by EGF (Fig. 1,
right panel). Together, these data reveal that the knockdown,
add-back, and imaging-based model recapitulates key features of ERK1/2
signaling seen with more conventional models (e.g. Western blotting
(6–9)).
These include relative potencies, duration of responses, and effects on
nucleocytoplasmic distribution in cells stimulated with EGF and PDBu. The
parallel effects on Egr-1-dependent transcription also demonstrate that the
transient and sustained ERK1/2 activation modes are interpreted by the cell at
the level of immediate early gene transcription
(6–9).
FIGURE 3.
Enhancement of ERK2 signaling by D319N mutation of ERK2-GFP.
A–C, cells transfected with ERK1/2 siRNAs were transduced with
Ad wild-type (WT) or D319N-mutated ERK2-GFP as indicated prior to
stimulation with 10 nm EGF (A) or 1 μm PDBu
(B and C) for the times indicated. Cells were stained before
image acquisition and analysis (as described in
Fig. 1) for the calculation of
whole-cell ppERK2 intensity (A and B, left panels), ppERK2
N:C ratio (A and B, middle-left panels), and the ERK2-GFP
N:C ratio (A and B, middle-right panels). Cells were
additionally transduced with Ad Egr-1 luciferase and Ad CMV
β-galactosidase vectors before stimulation to assess Egr-1 induction by
luciferase assay as described in Fig.
1 (A and B, right panels). Data shown were
obtained from three separate experiments, each with duplicate wells (mean
± S.E., n = 3). * = p < 0.05 and
** = p < 0.01, comparing WT with D319N conditions,
according to two-way ANOVA and Bonferroni post hoc tests. C,
representative cropped images, collected under conditions described in
A and B showing differences in ERK2-GFP distribution
(top panels) and ppERK2 levels (bottom panels) following
stimulation with 1 μm PDBu as indicated. Bar, 50
μm.
FIGURE 5.
DUSP siRNAs affect spatiotemporal ERK2-GFP regulation. Cells were
transfected in 96-well plates with 1 nm ERK1/2 siRNAs and 10
nm control (Ctrl) or siRNA SMARTpools targeting individual
DUSPs (as indicated) before addition of Ad ERK2-GFP. Cells were stimulated
with 1 μm PDBu as indicated, prior to staining and imaging (as
described under Fig. 1).
Representative cropped images are shown for each condition from ERK2-GFP
(top panels) and ppERK2 images (bottom panels).
Bar, 50 μm.
FIGURE 7.
Contribution of DUSP subfamilies to ERK2 regulation. A,
cells were transfected with ERK1/2 siRNAs and either 40 nm control
siRNAs (Ctrl si), 40 nm nuclear inducible MKP siRNAs
(Nuc Ind MKP si, 10 nm each of DUSP1, -2, -4, and -5
siRNAs), 40 nm cytoplasmic ERK MKP siRNAs (Cyt ERK MKP si,
10 nm each of DUSP6, -7, -9 and ctrl siRNAs), or 40
nm JNK/p38 siRNAs (JNK/p38 MKP si, 10 nm each
of DUSP10 and -16 siRNAs with 20 nm ctrl siRNAs) as
indicated. Cells were transduced with Ad ERK2-GFP prior to stimulation with 1
μm PDBu for the times indicated. Cells were stained before image
acquisition and analysis (as described in
Fig. 1) for the calculation of
whole-cell ppERK2 intensity (top panels), ppERK2 N:C ratio
(middle panels), and the ERK2-GFP N:C ratio (lower panels).
B, representative cropped images for control siRNA and nuclear
inducible MKP siRNA conditions (as indicated) collected as described (A,
left panels) and showing differences in ERK2-GFP (top panels)
and ppERK2 (bottom panels) distribution following stimulation with 1
μm PDBu as indicated. Bar, 50 μm. C, cells
treated as described in A were additionally transduced with Ad Egr-1
luciferase and Ad CMV β-galactosidase vectors before stimulation with
PDBu for times indicated to assess Egr-1 induction by luciferase assay (as
described in Fig. 1). Data
shown in A and C were obtained from four separate
experiments, each with duplicate wells (mean± S.E., n = 4).
* = p < 0.05 and **= p < 0.01,
comparing control siRNA to test conditions, according to two-way ANOVA and
Bonferroni post hoc tests.
Influence of D-domains on the potency of ERK2 signaling. Cells
transfected with ERK1/2 siRNAs were transduced with Ad wild-type (WT)
or D319N-mutated ERK2-GFP and analyzed for activation, localization, and
transcriptional activation as follows. A–C, cells were
stimulated in 96-well plates with the indicated concentrations of EGF for 5
min and stained before image acquisition and analysis (as described in
Fig. 1) for the calculation of
whole-cell ppERK2 intensity (A), the ERK2-GFP N:C ratio (B),
and whole-cell ERK2-GFP (N+C) levels (C). D, cells were
additionally transduced with Ad Egr-1 luciferase and Ad
CMVβ-galactosidasevectorsbeforestimulationwithindicatedconcentrationsof
EGF for 6 h and prior to lysis and luciferase assay (as described in
Fig. 1) for the assessment of
egr-1 promoter activity. Data shown were obtained from three separate
experiments, each with duplicate wells (mean± S.E., n = 3).
* = p < 0.05 and ** = p < 0.01,
comparing WT with D319N conditions, according to two-way ANOVA and Bonferroni
post hoc tests.Effects of D-domain Interference on ERK2 Activation, Trafficking, and
Egr-1 Transcription—The D319N mutation within the common docking
domain of ERK2 is analogous to the sevenmaker gain-of-function
mutation in Drosophila
(44), which perturbs the
ability of ERK2 to associate with D-domain binding partners without affecting
intrinsic kinase activity (15,
42). These partners include
all MKPs (1,
14,
16), making the D319N variant
a useful tool to study the influence of DUSP interaction on ERK2 responses. We
first assessed the dose dependence of EGF and PDBu effects under conditions of
ERK1/2 knockdown and reconstitution with WT or D319NERK2-GFP. We found that
D319N mutation did not affect the potency (log EC50 values) of EGF
or PDBu effects on ppERK2, ERK2-GFP N:C ratio, and Egr-1 luciferase activity
(Fig. 2, and data not shown). However, maximal ERK2-GFP N:C and
Egr-1 luciferase responses were significantly altered. As shown
(Fig. 2),
EGF-mediated changes in ERK2-GFP N:C ratio at 5 min of stimulation were
reduced by up to 50% by D319N mutation, whereas whole-cell ERK2-GFP intensity
(N+C) values remained unchanged (indicating comparable whole-cell expression
levels, Fig. 2), but
Egr-1 luciferase responses were increased ∼2.5-fold
(Fig. 2). In
contrast, inhibition of D-domain interactions had no effect on 5-min ppERK2
responses to EGF (Fig.
2). Similar trends were observed in cells stimulated
with PDBu (not shown).We characterized these differences further in time course studies using
maximally stimulating concentrations of EGF or PDBu. Early peak levels of
ppERK2 responses were unaltered by D319N mutation, but responses to both
stimuli were greatly increased at later time points
(Fig. 3, , left panels, and C). Comparing the
distribution of the ppERK2 signal intensity in the nucleus and cytoplasm
(ppERK2 N:C) revealed that prolongation of the whole-cell ppERK2 signal by
D319N mutation is associated with an increased proportion of ppERK2 in the
nucleus (Fig. 3, , middle left panels, and C). In
contrast, the ERK2-GFP N:C ratios from the same cells show that D319N actually
reduces the total amount of ERK2-GFP in the nucleus
(Fig. 3, , middle right panels, and C). The
D319N mutation also increased effects of both stimuli on Egr-1 transcription,
almost doubling responses at 4–6 h
(Fig. 3, , right panels). Taken together, these data
show that D319N-mediated inhibition of phosphatase binding does not increase
the sensitivity of ERK2-GFP to low concentrations of stimuli (see also Refs.
15,
19) but increases
ERK2-dependent transcriptional responses by prolonging its activation and
increasing the proportion of active ERK2 in the nucleus. The corresponding
decrease in ERK2-GFP N:C ratio is consistent with the fact that, in these
cells, high levels of nuclear accumulation are because of D-domain-dependent
scaffolding and signal termination by nuclear inducible MKPs
(19).Enhancement of ERK2 signaling by D319N mutation of ERK2-GFP.
A–C, cells transfected with ERK1/2 siRNAs were transduced with
Ad wild-type (WT) or D319N-mutated ERK2-GFP as indicated prior to
stimulation with 10 nm EGF (A) or 1 μm PDBu
(B and C) for the times indicated. Cells were stained before
image acquisition and analysis (as described in
Fig. 1) for the calculation of
whole-cell ppERK2 intensity (A and B, left panels), ppERK2
N:C ratio (A and B, middle-left panels), and the ERK2-GFP
N:C ratio (A and B, middle-right panels). Cells were
additionally transduced with Ad Egr-1 luciferase and Ad CMV
β-galactosidase vectors before stimulation to assess Egr-1 induction by
luciferase assay as described in Fig.
1 (A and B, right panels). Data shown were
obtained from three separate experiments, each with duplicate wells (mean
± S.E., n = 3). * = p < 0.05 and
** = p < 0.01, comparing WT with D319N conditions,
according to two-way ANOVA and Bonferroni post hoc tests. C,
representative cropped images, collected under conditions described in
A and B showing differences in ERK2-GFP distribution
(top panels) and ppERK2 levels (bottom panels) following
stimulation with 1 μm PDBu as indicated. Bar, 50
μm.Regulation of DUSP Transcription and ERK2 Responses—Because
D319N mutations inhibit ERK2 association with MKP family DUSPs
(14,
16,
19), the data above are
indicative of a major role for them in shaping ERK2 responses. Many ERK1/2
stimuli induce the transcription of nuclear inducible MKPs to act in negative
feedback loops, but the involvement of other DUSPs has not been extensively
explored in this context. We first assessed expression and knockdown of
DUSP1–16, -18, -19, -21, and -22 using qPCR and siRNAs. Of these 20
transcripts, we found that DUSP13, -15, and -21 mRNAs were not detectable in
these cells and that DUSP8 mRNA could not be reduced by more than 30%
following siRNA transfection (not shown), so these enzymes were excluded from
further analysis. The qPCR revealed that a large number of the remaining DUSP
transcripts (9 of 16) were increased by EGF and/or PDBu
(Fig. 4). PDBu had a
greater effect than EGF on both the number of transcripts regulated (six
compared with three) and, in some cases, the magnitude of transcription
(Fig. 4). Thus,
although transcriptional regulation appeared characteristic of the nuclear
inducible MKPs, it also occurred among the cytoplasmic ERK MKPs (DUSP6), the
JNK/p38 MKPs (DUSP10), and the atypical DUSPs (DUSP14)
(Fig. 4). ERK2
activity and signal duration clearly plays a major role in these
transcriptional responses, as evidenced by the sensitivity to ERK1/2
knock-down (inhibiting effects on DUSP1 and -2 transcription) and D319NERK2-GFP expression (enhancing transcription of DUSP2, -5, and -6)
(Fig. 4).
FIGURE 4.
Stimulus and ERK dependence of DUSP transcription and effects of DUSP
siRNAs on ERK2 signaling. A, cells were transfected in 6-well
plates with control siRNAs (Ctrl) or ERK1/2 siRNAs and transduced
with Ad wild-type (WT) or D319N-mutated ERK2-GFP as indicated. Cells
were either left unstimulated (Basal) or treated with 10
nm EGF (left panel) or 1 μm PDBu (right
panel) for 120 min. Total RNA isolates were analyzed for relative levels
of DUSP2 mRNA using qPCR protocols described under “Experimental
Procedures.” Data shown are average values from three independent
experiments represented as fold change from basal levels and presented as a
heat map. DUSPs are grouped according to sequence similarity and substrate
specificity, and data included are values found to differ significantly from
control (basal) conditions using one-way ANOVA and Dunnett's post hoc test,
accepting p < 0.05 as significant. B, cells were
transfected in 96-well plates with 1 nm ERK1/2 siRNAs and 10
nm control (Ctrl) or siRNA SMARTpools targeting individual
DUSPs (as indicated) before addition of Ad ERK2-GFP. Cells were stimulated
with 1 μm PDBu or 10 nm EGF as indicated, prior to
staining and imaging (as described in Fig.
1). Data are expressed in the heat map as the extent of difference
above or below control values for each condition and time point for ppERK2
intensity (left panel) and ERK2-GFP N:C ratio (right panel)
from four separate experiments performed in duplicate. Targets are again
grouped according to sequence similarity and substrate specificity.
Statistical analysis was performed using one-way ANOVA and Dunnett's post hoc
test, accepting p < 0.05 as significant. Nonsignificant changes
are shown as white blocks for both experiments.
Stimulus and ERK dependence of DUSP transcription and effects of DUSP
siRNAs on ERK2 signaling. A, cells were transfected in 6-well
plates with control siRNAs (Ctrl) or ERK1/2 siRNAs and transduced
with Ad wild-type (WT) or D319N-mutated ERK2-GFP as indicated. Cells
were either left unstimulated (Basal) or treated with 10
nm EGF (left panel) or 1 μm PDBu (right
panel) for 120 min. Total RNA isolates were analyzed for relative levels
of DUSP2 mRNA using qPCR protocols described under “Experimental
Procedures.” Data shown are average values from three independent
experiments represented as fold change from basal levels and presented as a
heat map. DUSPs are grouped according to sequence similarity and substrate
specificity, and data included are values found to differ significantly from
control (basal) conditions using one-way ANOVA and Dunnett's post hoc test,
accepting p < 0.05 as significant. B, cells were
transfected in 96-well plates with 1 nm ERK1/2 siRNAs and 10
nm control (Ctrl) or siRNA SMARTpools targeting individual
DUSPs (as indicated) before addition of Ad ERK2-GFP. Cells were stimulated
with 1 μm PDBu or 10 nm EGF as indicated, prior to
staining and imaging (as described in Fig.
1). Data are expressed in the heat map as the extent of difference
above or below control values for each condition and time point for ppERK2
intensity (left panel) and ERK2-GFP N:C ratio (right panel)
from four separate experiments performed in duplicate. Targets are again
grouped according to sequence similarity and substrate specificity.
Statistical analysis was performed using one-way ANOVA and Dunnett's post hoc
test, accepting p < 0.05 as significant. Nonsignificant changes
are shown as white blocks for both experiments.To investigate possible roles of these DUSPs, we reduced the mRNA levels of
each DUSPthrough siRNA targeting. Assessment of mRNA levels 48 h after siRNA
transfection revealed at least 70% reduction in mRNA levels for each of the 16
genes tested (supplemental Table 1). These DUSP knockdown conditions were used
in conjunction with ERK1/2 siRNAs and Ad WT ERK2-GFP to assess DUSP regulation
of ERK2. None of the siRNAs significantly altered whole-cell ERK2-GFP
expression levels, cell number, or the proportion of apoptotic cells
(supplemental Table 1) arguing against nonspecific cytotoxic effects. Forty
eight hours after transfection, cells were either left untreated (basal) or
stimulated with EGF (5 and 120 min) or PDBu (15 and 120 min) prior to
assessment of ppERK2 staining and ERK2-GFP localization. As shown
(Fig. 4), we found 12
phosphatases that had a significant effect on PDBu and/or EGF-stimulated ERK2
phosphorylation and/or compartmentalization
(Fig. 4). None of the
siRNAs had a measurable effect on whole-cell ppERK2 levels in unstimulated
cells (Fig. 4,
left panel), but siRNAs to DUSP3, -5, and -10 significantly reduced
the ERK2-GFP N:C ratio, and DUSP2 and -7 siRNAs increased ERK2-GFP nuclear
localization under basal conditions (Fig.
4, right panel). siRNAs to DUSP3, -9, -10, and
-16 all reduced ppERK2 and/or ERK2-GFP responses to both EGF and PDBu
(Fig. 4). No siRNAs
increased ppERK2 responses to EGF or PDBu, but siRNAs to DUSP5, -7, -12, -14,
and -18 specifically inhibited the PDBu-mediated ppERK2 response (particularly
at later time points) without altering the EGF response at either time point
(Fig. 4). As expected
(19), siRNAs to DUSP2 and -4
reduced the ERK2-GFP N:C ratio in cells stimulated with PDBu without
measurably altering the ppERK2 response nor any aspect of the EGF response
(Fig. 4). DUSP1
knockdown was the sole condition that increased the ERK2-GFP N:C ratio in
stimulated cells. DUSP3 and -9 siRNAs were the only treatments to
significantly reduce the effect of both EGF and PDBu on ppERK2 levels and
ERK2-GFP N:C ratio (Fig.
4). The striking findings from these experiments are as
follows. First, many DUSPs from both the MKP and atypical groups play specific
roles in shaping ERK2 responses, with little overlap or redundancy of function
(illustrated in representative images in
Fig. 5). Second, the unifying
theme of action across each subgroup of DUSPs was that the knockdowns
inhibited ligand effects on ppERK2 and/or ERK2-GFP N:C ratio. However, the
nuclear inducible MKPs stood out as the only group that had pronounced
stimulus-specific effects on ERK2-GFP N:C ratio without an overall effect on
phosphorylation state.DUSP siRNAs affect spatiotemporal ERK2-GFP regulation. Cells were
transfected in 96-well plates with 1 nm ERK1/2 siRNAs and 10
nm control (Ctrl) or siRNA SMARTpools targeting individual
DUSPs (as indicated) before addition of Ad ERK2-GFP. Cells were stimulated
with 1 μm PDBu as indicated, prior to staining and imaging (as
described under Fig. 1).
Representative cropped images are shown for each condition from ERK2-GFP
(top panels) and ppERK2 images (bottom panels).
Bar, 50 μm.Effects of DUSP Knockdown on Stimulus-specific Induction of
Egr-1—As most DUSP knockdowns reduced ppERK2 responses and/or
ERK2-GFP N:C ratio, we focused on a selection of DUSPs showing a range of
effects on ERK2-GFP activation and trafficking to see if they had
corresponding effects on Egr-1 transcription. We compared EGF and
PDBu-mediated Egr-1 induction in the presence and absence of siRNAs to
DUSP1–3, -9, -10, and -16 (Fig.
6). Knockdown of DUSP3, -9, -10, and -16 reduced PDBu effects on
Egr-1 luciferase, paralleling their ability to reduce the PDBu effect on
ppERK2 and/or ERK2-GFP N:C response. Similar effects were seen in
EGF-stimulated cells, suggesting that the effects of these DUSPs were not
stimulus-specific (Fig. 6). For
each of these DUSPs, effects of knockdown on ERK2 activity were predictive of
functional outcome: a reduction in ppERK2 response led to a reduction in
transcriptional activation. In contrast, knockdown of the nuclear inducible
MKPs, DUSP1 and -2, did not affect ppERK2 responses but increased and
decreased ERK2-GFP N:C localization, respectively
(Fig. 6). They also had
stimulus-specific effects on Egr-1 transcription. DUSP2 knockdown caused a 40%
increase in PDBu-stimulated Egr-1 luciferase (without altering the
EGF-mediated response), and DUSP1 knockdown had no effect on the levels of
Egr-1 luciferase activity under any condition
(Fig. 6).
FIGURE 6.
Comparison of ERK2-GFP activation, localization, and regulation of Egr-1
following DUSP knockdown. Cells were transfected with 1 nm
ERK1/2 siRNAs and 10 nm control (Ctrl) or siRNA SMARTpools
targeting individual DUSPs (as indicated) before addition of Ad ERK2-GFP.
Top and middle panels, cells were either left unstimulated
(basal) or treated with 1 μm PDBu or 10 nm EGF for
120 min as indicated, prior to staining and imaging (as described in
Fig. 1). Bottom panel,
cells were additionally transduced with Ad Egr-1 luciferase and Ad CMV
β-galactosidase vectors before stimulation with 1 μm PDBu
or 10 nm EGF for 6 h as indicated to assess Egr-1 induction by
luciferase assay (as described in Fig.
1). Data are expressed as average ppERK2 values (top
panel), ERK2-GFP N:C ratio (middle panel), and fold change in
Egr-1 luciferase activity compared with unstimulated control siRNA-transfected
cells (bottom panel) and were obtained from three separate
experiments, each with duplicate observations (mean ± S.E., n
= 3). * = p < 0.05 and ** = p <
0.01, comparing DUSP and control siRNA conditions for each stimulus, according
to one-way ANOVA and Dunnett's post hoc test.
Functional Profiling of DUSP Family Effects on ERK
Signaling—The data outlined above reveal the stimulus-specific
shaping of ERK2 responses by members of each DUSP class. They also demonstrate
the importance of assaying localization as well as phosphorylation state when
screening for changes in ERK2 regulation. This appears to be especially
pertinent when dealing with the nuclear inducible MKPs, presumably because
they can both dephosphorylate and scaffold ERK2
(18,
19) and because knockdown of
one can lead to compensatory changes in another. For example, we have found
that knockdown of DUSP1 increases PDBu-stimulated DUSP2 expression, just as
knockdown of DUSP2 increases PDBu-stimulated DUSP1 expression
(19). In light of such
compensation we found that function of these proteins could best be revealed
by simultaneous knockdown of multiple nuclear inducible DUSPs
(19). By extending this we
have combined siRNAs to knock down all nuclear inducible MKPs (DUSP1, -2, -4,
and -5), all cytoplasmic ERK MKPs (DUSP6, -7, and -9), or both JNK/p38 MKPs
(DUSP10 and -16) before determining PDBu effects. As shown
(Fig. 7, , left panels, and representative images in
B), knockdown of the nuclear inducible MKPs did not alter whole-cell
ppERK2 responses but caused a marked prolongation of PDBu effects on the
ppERK2 N:C ratio while reducing its effects on the ERK2-GFP N:C ratio and
greatly enhancing its effect on transcriptional activation of Egr-1. These
data demonstrate the importance of the nuclear inducible MKPs (collectively)
as inhibitors of sustained ERK signaling by virtue of their ability to
inactivate and scaffold ERK within the nucleus. In contrast, siRNAs targeting
the cytoplasmic ERK MKPs did not alter PDBu effects on whole-cell ppERK2
responses or on the ppERK2 N:C ratio and had only a modest inhibitory effect
on ERK2 distribution (reducing the PDBu effect on ERK2-GFP N:C ratio at 240
min only). They also failed to alter PDBu-stimulated Egr-1 luciferase
activity, arguing against a major role for cytoplasmic ERK MKPs in shaping of
sustained ERK signaling in this model. Knockdown of the JNK/p38 MKPs also
failed to alter PDBu effects on ppERK2 distribution but it did reduce the PDBu
effect on the whole-cell ppERK2 levels and ERK2-GFP N:C ratio (significant
reductions of both at 60–120 min) and also inhibited the PDBu effect on
Egr-1 luciferase activity. Thus, in this model the JNK/p38 MKPs act (together)
as positive regulators of ERK2 signaling, supporting Egr-1 luciferase activity
by enhancing ERK2 phosphorylation. This is in sharp contrast to the nuclear
inducible MKPs that act (collectively) as negative regulators of ERK2
signaling, primarily by reducing the proportion of active ERK2 within the
nucleus (Fig. 7).Comparison of ERK2-GFP activation, localization, and regulation of Egr-1
following DUSP knockdown. Cells were transfected with 1 nm
ERK1/2 siRNAs and 10 nm control (Ctrl) or siRNA SMARTpools
targeting individual DUSPs (as indicated) before addition of Ad ERK2-GFP.
Top and middle panels, cells were either left unstimulated
(basal) or treated with 1 μm PDBu or 10 nm EGF for
120 min as indicated, prior to staining and imaging (as described in
Fig. 1). Bottom panel,
cells were additionally transduced with Ad Egr-1 luciferase and Ad CMV
β-galactosidase vectors before stimulation with 1 μm PDBu
or 10 nm EGF for 6 h as indicated to assess Egr-1 induction by
luciferase assay (as described in Fig.
1). Data are expressed as average ppERK2 values (top
panel), ERK2-GFP N:C ratio (middle panel), and fold change in
Egr-1 luciferase activity compared with unstimulated control siRNA-transfected
cells (bottom panel) and were obtained from three separate
experiments, each with duplicate observations (mean ± S.E., n
= 3). * = p < 0.05 and ** = p <
0.01, comparing DUSP and control siRNA conditions for each stimulus, according
to one-way ANOVA and Dunnett's post hoc test.Contribution of DUSP subfamilies to ERK2 regulation. A,
cells were transfected with ERK1/2 siRNAs and either 40 nm control
siRNAs (Ctrl si), 40 nm nuclear inducible MKP siRNAs
(Nuc Ind MKP si, 10 nm each of DUSP1, -2, -4, and -5
siRNAs), 40 nm cytoplasmic ERK MKP siRNAs (Cyt ERK MKP si,
10 nm each of DUSP6, -7, -9 and ctrl siRNAs), or 40
nm JNK/p38 siRNAs (JNK/p38 MKP si, 10 nm each
of DUSP10 and -16 siRNAs with 20 nm ctrl siRNAs) as
indicated. Cells were transduced with Ad ERK2-GFP prior to stimulation with 1
μm PDBu for the times indicated. Cells were stained before image
acquisition and analysis (as described in
Fig. 1) for the calculation of
whole-cell ppERK2 intensity (top panels), ppERK2 N:C ratio
(middle panels), and the ERK2-GFP N:C ratio (lower panels).
B, representative cropped images for control siRNA and nuclear
inducible MKP siRNA conditions (as indicated) collected as described (A,
left panels) and showing differences in ERK2-GFP (top panels)
and ppERK2 (bottom panels) distribution following stimulation with 1
μm PDBu as indicated. Bar, 50 μm. C, cells
treated as described in A were additionally transduced with Ad Egr-1
luciferase and Ad CMV β-galactosidase vectors before stimulation with
PDBu for times indicated to assess Egr-1 induction by luciferase assay (as
described in Fig. 1). Data
shown in A and C were obtained from four separate
experiments, each with duplicate wells (mean± S.E., n = 4).
* = p < 0.05 and **= p < 0.01,
comparing control siRNA to test conditions, according to two-way ANOVA and
Bonferroni post hoc tests.Relevance of Protein Neosynthesis and JNK or p38MAPKs for JNK/p38 MKP
Effects on ERK2 Signaling—We next explored mechanisms of JNK/p38
MKP action, focusing first on relevance of protein neosynthesis. We have
previously shown that the sustained effects of PDBu on whole-cell ppERK2
levels and ERK2-GFP N:C ratio and its more transient effect on ppERK2 N:C
ratio are all increased and/or prolonged by the protein synthesis inhibitor,
CHX. In contrast, when EGF is used to elicit transient ERK activation, CHX has
little or no effect (19)
(supplemental Fig. 2). These effects are thought to reflect prevention of
nuclear inducible MKP neosynthesis as evidenced by the close parallels between
effects of CHX and knockdown of nuclear inducible MKPs as well as with effects
of the D319N mutation that inhibits ERK2 binding to nuclear inducible MKPs
(Fig. 3). To determine the
relevance of protein synthesis for JNK/p38 effects, we repeated the JNK/p38
siRNA experiments (shown in Fig.
7) in the presence and absence of CHX. As shown
(Fig. 8) CHX caused the
expected prolongation of PDBu effects on ppERK2 levels and nuclear
localization of ppERK2, whereas inhibiting its effects on ERK2-GFP N:C
localization. JNK/p38 siRNAs reduced PDBu effects on whole-cell ppERK2 levels
and on ERK2-GFP distribution but did not alter its effects on ppERK2 N:C ratio
(Fig. 8). JNK/p38 siRNAs also
caused a pronounced inhibition of PDBu effects on each of these imaging end
points in the presence of CHX (Fig.
8). The fact that effects of JNK/p38 knockdown are maintained or
increased by CHX argues that shaping of ERK2 responses by JNK/p38 MKPs is not
dependent upon protein neosynthesis despite the fact that PDBu increased
DUSP10 transcription (Fig.
4) This is in direct contrast to the nuclear inducible
MKPs, for which neosynthesis is clearly necessary
(13,
14,
18,
19,
43,
45).
FIGURE 8.
Effects of protein synthesis inhibition on JNK/p38 MKP regulation of
ERK2. A–C, cells were transfected with 1 nm
ERK1/2 siRNAs and either 40 nm control siRNAs (Ctrl si) or
40 nm JNK/p38 siRNAs (JNK/p38 MKP si, 10 nm
each of DUSP10 and -16 siRNAs with 20 nm ctrl siRNAs) as
indicated. Cells were transduced with Ad ERK2-GFP prior to treatment with 30
μm cycloheximide (CHX) as indicated for 30 min prior to
stimulation with 1 μm PDBu for the times indicated. Cells were
stained before image acquisition and analysis (as described in
Fig. 1) for the calculation of
whole-cell ppERK2 intensity (A), ppERK2 N:C ratio (B), and
the ERK2-GFP N:C ratio (C). Data shown in all panels were obtained
from four separate experiments, each with duplicate wells (mean ± S.E.,
n = 4). * = p < 0.05 and ** =
p < 0.01, comparing control and JNK/p38 siRNA conditions to those
with CHX, according to two-way ANOVA and Bonferroni post hoc tests.
Changes in JNK/p38 activity can have profound effects on the ERKMAPK
pathway (46), and a recent
study demonstrated that impairment of ERK1/2 activation in DUSP2-/-
mice was because of increased JNK activity
(45). The observation that
JNK/p38 MKPs influence ERK2 signaling in this model implies that PDBu effects
on ERK2 may be influenced by cross-talk from concomitantly activated p38 and
JNKMAPKs. To address this possibility we determined effects of
pharmacological inhibition of JNK (using SP600125) and p38 (using SB203580) on
ERK2 signaling and also determined the effects of the JNK/p38 MKP siRNAs in
the presence of these inhibitors. We found that when used alone, these
inhibitors did not measurably influence responses to PDBu
(Fig. 9). As expected,
knockdown of the JNK/p38 MKPs inhibited PDBu effects on whole-cell ppERK2
levels, ERK2-GFP N:C ratio, and Egr-1 luciferase responses without altering
its effects on ppERK2 N:C ratios (Fig.
7 and Fig. 9).
However, the knockdown effects on Egr-1 activation and ERK2-GFP nuclear
localization were reversed by pharmacological inhibition of JNK or p38
activity; Fig. 9 shows data for
120 min of stimulation with PDBu, and similar effects were seen with 30 or 60
min of stimulation (not shown). Thus, the observed effects of JNK/p38 MKP
siRNAs are, at least partially, dependent upon activation of JNK and/or p38MAPKs. These data therefore identify the JNK/p38MAPKs as modulators of ERK2
signaling and as the pertinent targets for JNK/p38 MKPs in this respect.
FIGURE 9.
Effects of JNK and p38 kinase inhibition on JNK/p38 MKP regulation of
ERK2. Cells were transfected with 1 nm ERK1/2 siRNAs and either
40 nm control siRNAs (Ctrl si) or 40 nm JNK/p38
siRNAs (JNK/p38 MKP si, 10 nm each of DUSP10 and -16
siRNAs with 20 nm ctrl siRNAs) as indicated. Cells were transduced
with Ad ERK2-GFP prior to treatment with 10 μm SP600125
(SP) or 20 μm SB203580 (SB) as indicated for
30 min prior to stimulation with 1 μm PDBu for 120 min. Cells
were stained before image acquisition and analysis (as described in
Fig. 1) for the calculation of
whole-cell ppERK2 intensity (middle panel) and the ERK2-GFP N:C ratio
(lower panel). Cells in the upper panel were treated as
described above but were additionally transduced with Ad Egr-1 luciferase and
Ad CMV β-galactosidase vectors before stimulation with 1 μm
PDBu for 6 h prior to assessment of Egr-1 induction by luciferase assay (as
described in Fig. 1). Data
shown were obtained from three separate experiments, each with triplicate
wells (mean ± S.E., n = 3). * = p <
0.05 and ** = p < 0.01, comparing JNK/p38 siRNA
conditions with and without SP600125 (SP) or SB203580 (SB),
according to one-way ANOVA and Dunnett's post hoc tests.
Summary—Multiple DUSPs clearly contribute to the regulation
of ERK1/2, and at least 12 DUSPs can dephosphorylate ERK1/2 in vitro
(13,
14). However, the prediction
of DUSP regulation of ERK1/2 in cells is complicated by a number of factors.
First, they can often dephosphorylate multiple MAPK substrates
(13,
14). Second, their
transcription can be rapidly regulated in a stimulus-specific manner. Third,
their expression is highly cell type-specific
(Fig. 4)
(13,
14,
19,
45). These properties make
them exciting therapeutic targets, and a number of DUSP inhibitors have been
discovered in recent years
(35–38).
It is important to recognize, however, that DUSPs may influence many
interconnecting signaling and feedback pathways so their loss or inhibition
can have positive or negative effects on ERK1/2 signaling
(13,
14,
19,
45). This underlines the need
to explore DUSP function within intact systems, but we know of no previous
work in which mammalianDUSPs have been systematically knocked down to assess
their influence on ERK1/2 signaling. Here, we have done so and have determined
the effects of siRNA-mediated knockdown of individual DUSPs on multiple
aspects of ERK2 regulation. Our data reveal that a surprisingly large number
of DUSPs influence ERK2 signaling in this model. These include members of the
nuclear inducible MKPs (DUSP1, -2, -4, and -5). They also include MKPs of the
cytoplasmic ERK1/2-selective group (DUSP7 and -9), the JNK/p38-selective group
(DUSP10 and -16), as well as four of the atypical DUSPs.Effects of protein synthesis inhibition on JNK/p38 MKP regulation of
ERK2. A–C, cells were transfected with 1 nm
ERK1/2 siRNAs and either 40 nm control siRNAs (Ctrl si) or
40 nm JNK/p38 siRNAs (JNK/p38 MKP si, 10 nm
each of DUSP10 and -16 siRNAs with 20 nm ctrl siRNAs) as
indicated. Cells were transduced with Ad ERK2-GFP prior to treatment with 30
μm cycloheximide (CHX) as indicated for 30 min prior to
stimulation with 1 μm PDBu for the times indicated. Cells were
stained before image acquisition and analysis (as described in
Fig. 1) for the calculation of
whole-cell ppERK2 intensity (A), ppERK2 N:C ratio (B), and
the ERK2-GFP N:C ratio (C). Data shown in all panels were obtained
from four separate experiments, each with duplicate wells (mean ± S.E.,
n = 4). * = p < 0.05 and ** =
p < 0.01, comparing control and JNK/p38 siRNA conditions to those
with CHX, according to two-way ANOVA and Bonferroni post hoc tests.Effects of JNK and p38 kinase inhibition on JNK/p38 MKP regulation of
ERK2. Cells were transfected with 1 nm ERK1/2 siRNAs and either
40 nm control siRNAs (Ctrl si) or 40 nm JNK/p38
siRNAs (JNK/p38 MKP si, 10 nm each of DUSP10 and -16
siRNAs with 20 nm ctrl siRNAs) as indicated. Cells were transduced
with Ad ERK2-GFP prior to treatment with 10 μm SP600125
(SP) or 20 μm SB203580 (SB) as indicated for
30 min prior to stimulation with 1 μm PDBu for 120 min. Cells
were stained before image acquisition and analysis (as described in
Fig. 1) for the calculation of
whole-cell ppERK2 intensity (middle panel) and the ERK2-GFP N:C ratio
(lower panel). Cells in the upper panel were treated as
described above but were additionally transduced with Ad Egr-1 luciferase and
Ad CMV β-galactosidase vectors before stimulation with 1 μm
PDBu for 6 h prior to assessment of Egr-1 induction by luciferase assay (as
described in Fig. 1). Data
shown were obtained from three separate experiments, each with triplicate
wells (mean ± S.E., n = 3). * = p <
0.05 and ** = p < 0.01, comparing JNK/p38 siRNA
conditions with and without SP600125 (SP) or SB203580 (SB),
according to one-way ANOVA and Dunnett's post hoc tests.Although a screen of this nature cannot reveal mechanisms, it did reveal a
remarkable degree of specificity. The functional profiles of DUSP knockdowns
were almost all distinct when the stimulation conditions (stimulus and time)
and end points (ppERK2 levels, ERK2-GFP N:C ratio, and Egr-1 transcription)
were taken into consideration (Figs.
4,
5,
6). The other obvious finding
is that the effects of DUSP knockdown (with the exception of the nuclear
inducible MKPs) were all negative; DUSP knockdown caused a decrease in ppERK2
response and a corresponding decrease in Egr-1 transcription
(Fig. 6). This is in stark
contrast to the experiments we performed expressing a D319N variant of
ERK2-GFP to inhibit interactions with phosphatases, which had a pronounced
enhancing effect on ERK2 activity (Fig.
2 and Fig. 3). In
this comparison it is important to note that this mutation will only affect
the binding of phosphatases that contain D-domains, and will only affect
association with ERK2, whereas the catalytic activity of the DUSPs and their
effect on other MAPKs will be left intact. In contrast, the siRNA knockdowns
represent the impact of selective phosphatase inhibition. These data may
therefore prove useful in the design and use of isotype-specific DUSP
inhibitors and inhibitors that reduce DUSP-ERK1/2 interaction, as the outcomes
can clearly be very different. This study also sounds a cautionary note in
screening assays for ERK1/2 regulation. By monitoring two end points (ppERK2
and ERK2-GFP N:C) with two stimuli (EGF and PDBu) and two time points (for
each stimulus), we have found that 12 of the 16 DUSPs tested influence ERK2
signaling. Had we performed a single end point assay screening for effects on
ERK2-GFP N:C ratio after 15 min of stimulation with PDBu, we would have
obtained only one hit, and if we had just screened for effects on the acute
ERK2-GFP N:C response to EGF, we would have obtained none.Following up the screen with more mechanistic studies, we have found that
the nuclear inducible MKPs act (collectively) as negative regulators of ERK2
signaling, whereas the JNK/p38 MKPs act (together) as positive regulators
(summarized in Fig. 10).
Interestingly, they do so by distinct mechanisms as the nuclear inducible MKPs
inhibit ERK-dependent transcription by reducing the proportion of ppERK2 in
the nucleus (but without altering the whole-cell level of active kinase),
whereas the JNK/p38 MKPs support ERK-dependent transcription by increasing
whole-cell ppERK2 levels. Moreover, the JNK/p38 MKPs appear to shape
PDBu-mediated ERK2 signaling by acting upon JNK and p38MAPKs.
FIGURE 10.
Model of ERK2 regulation by nuclear inducible and JNK/p38 MKPs. ERK2
activation and translocation to the nucleus causes neosynthesis of the nuclear
inducible MKPs (DUSP1, -2, -4, and -5) that collectively mediate both
dephosphorylation and scaffolding of ERK2 in the nucleus. Previous studies
have revealed that all nuclear inducible MKPs can contribute to ERK2
dephosphorylation, but only DUSP2, -4, and -5 stably associate with ERK2,
whereas DUSP1 inactivates and releases ERK2 for reactivation in the cytosol
(18,
19). This presumably
facilitates sustained ERK2 signals in the face of persistent upstream stimuli.
In contrast, we find that the JNK/p38 MKPs (DUSP10 and -16) have a positive
role in ERK2 regulation by inactivating JNK and p38 kinases. The proteins that
mediate negative cross-talk between the JNK, p38, and ERK2 pathways have not
been identified in this system but have been defined in others
(46).
Model of ERK2 regulation by nuclear inducible and JNK/p38 MKPs. ERK2
activation and translocation to the nucleus causes neosynthesis of the nuclear
inducible MKPs (DUSP1, -2, -4, and -5) that collectively mediate both
dephosphorylation and scaffolding of ERK2 in the nucleus. Previous studies
have revealed that all nuclear inducible MKPs can contribute to ERK2
dephosphorylation, but only DUSP2, -4, and -5 stably associate with ERK2,
whereas DUSP1 inactivates and releases ERK2 for reactivation in the cytosol
(18,
19). This presumably
facilitates sustained ERK2 signals in the face of persistent upstream stimuli.
In contrast, we find that the JNK/p38 MKPs (DUSP10 and -16) have a positive
role in ERK2 regulation by inactivating JNK and p38 kinases. The proteins that
mediate negative cross-talk between the JNK, p38, and ERK2 pathways have not
been identified in this system but have been defined in others
(46).Together, our findings support the notion that DUSPs represent nonredundant
regulators of ERK2 signal regulation in response to external stimuli. The
degree of specificity revealed in this study support the use of multiple end
point microscopy-based assays to resolve effects of DUSP regulation of ERK1/2.
Most importantly, the specificity revealed in this investigation may well
prove important in the exploitation of DUSPs as therapeutic targets.
Authors: Alice J Chen; Guisheng Zhou; Todd Juan; Suzanne M Colicos; John P Cannon; Maria Cabriera-Hansen; Christian F Meyer; Roland Jurecic; Neal G Copeland; Debra J Gilbert; Nancy A Jenkins; Fred Fletcher; Tse-Hua Tan; John W Belmont Journal: J Biol Chem Date: 2002-07-23 Impact factor: 5.157
Authors: Song Li; Ekaette F Mbong; Denise T John; Tomohiro Terasaka; Danmei Li; Mark A Lawson Journal: Endocrinology Date: 2018-02-01 Impact factor: 4.736
Authors: Veronika Reiterer; Dirk Fey; Walter Kolch; Boris N Kholodenko; Hesso Farhan Journal: Proc Natl Acad Sci U S A Date: 2013-07-11 Impact factor: 11.205
Authors: Nicolle Kränkel; Stephen Paul Armstrong; Craig Alexander McArdle; Colin Dayan; Paolo Madeddu Journal: PLoS One Date: 2010-06-17 Impact factor: 3.240
Authors: Stephen P Armstrong; Christopher J Caunt; Robert C Fowkes; Krasimira Tsaneva-Atanasova; Craig A McArdle Journal: J Biol Chem Date: 2009-12-18 Impact factor: 5.157