Literature DB >> 18645627

The development of chromosome microdissection and microcloning technique and its applications in genomic research.

Ruo-Nan Zhou1, Zan-Min Hu.   

Abstract

The technique of chromosome microdissection and microcloning has been developed for more than 20 years. As a bridge between cytogenetics and molecular genetics, it leads to a number of applications: chromosome painting probe isolation, genetic linkage map and physical map construction, and expressed sequence tags generation. During those 20 years, this technique has not only been benefited from other technological advances but also cross-fertilized with other techniques. Today, it becomes a practicality with extensive uses. The purpose of this article is to review the development of this technique and its application in the field of genomic research. Moreover, a new method of generating ESTs of specific chromosomes developed by our lab is introduced. By using this method, the technique of chromosome microdissection and microcloning would be more valuable in the advancement of genomic research.

Year:  2007        PMID: 18645627      PMCID: PMC2474687          DOI: 10.2174/138920207780076929

Source DB:  PubMed          Journal:  Curr Genomics        ISSN: 1389-2029            Impact factor:   2.236


  61 in total

1.  A novel method to isolate the common fraction of two DNA samples: hybrid specific amplification (HSA).

Authors:  F Lecerf; L Foggia; P Mulsant; A Bonnet; F Hatey
Journal:  Nucleic Acids Res       Date:  2001-09-01       Impact factor: 16.971

2.  Microdissection and chromosome painting of plant B chromosomes.

Authors:  A Houen; B L Field; V A Saunders
Journal:  Methods Cell Sci       Date:  2001

3.  FAST-FISH with laser beam microdissected DOP-PCR probe distinguishes the sex chromosomes of Silene latifolia.

Authors:  Roman Hobza; Martina Lengerova; Halina Cernohorska; Jiri Rubes; Boris Vyskot
Journal:  Chromosome Res       Date:  2004       Impact factor: 5.239

4.  Familial insertion (3;5)(q25.3;q22.1q31.3) with deletion or duplication of chromosome region 5q22.1-5q31.3 in ten unbalanced carriers.

Authors:  Y H J M Arens; J J M Engelen; L C P Govaerts; C M van Ravenswaay; W H Loneus; J C M van Lent-Albrechts; M van der Blij-Philipsen; A J H Hamers; C T R M Schrander-Stumpel
Journal:  Am J Med Genet A       Date:  2004-10-01       Impact factor: 2.802

5.  Microdissection of human chromosomes by a laser microbeam.

Authors:  S Monajembashi; C Cremer; T Cremer; J Wolfrum; K O Greulich
Journal:  Exp Cell Res       Date:  1986-11       Impact factor: 3.905

6.  Tetrasomy 12pter-12p13.31 in a girl with partial Pallister-Killian syndrome phenotype.

Authors:  Joris Robert Vermeesch; Cindy Melotte; Ivo Salden; Mariluce Riegel; Vladimir Trifnov; Anna Polityko; Natalia Rumyantseva; Irina Naumchik; Heike Starke; Gert Matthijs; Albert Schinzel; Jean-Pierre Fryns; Thomas Liehr
Journal:  Eur J Med Genet       Date:  2005 Jul-Sep       Impact factor: 2.708

7.  Construction and characterization of band-specific DNA libraries.

Authors:  H J Lüdecke; G Senger; U Claussen; B Horsthemke
Journal:  Hum Genet       Date:  1990-05       Impact factor: 4.132

8.  Chromosome painting of Y chromosomes and isolation of a Y chromosome-specific repetitive sequence in the dioecious plant Rumex acetosa.

Authors:  F Shibata; M Hizume; Y Kuroki
Journal:  Chromosoma       Date:  1999-08       Impact factor: 4.316

9.  Screening and analysis of differentially expressed genes from an alien addition line of wheat Thinopyrum intermedium induced by barley yellow dwarf virus infection.

Authors:  Shu-Mei Jiang; Long Zhang; Jun Hu; Rui Shi; Guang-He Zhou; Yu-Hong Chen; Wei-Bo Yin; Richard R-C Wang; Zan-Min Hu
Journal:  Genome       Date:  2004-12       Impact factor: 2.166

10.  A DNA library from an individual Beta patellaris chromosome conferring nematode resistance obtained by microdissection of meiotic metaphase chromosomes.

Authors:  C Jung; U Claussen; B Horsthemke; F Fischer; R G Herrmann
Journal:  Plant Mol Biol       Date:  1992-11       Impact factor: 4.076

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  13 in total

1.  Origin and molecular organization of supernumerary chromosomes of Prochilodus lineatus (characiformes, prochilodontidae) obtained by DNA probes.

Authors:  Tatiana Aparecida Voltolin; Alejandro Laudicina; José Augusto Senhorini; Jehud Bortolozzi; Cláudio Oliveira; Fausto Foresti; Fábio Porto-Foresti
Journal:  Genetica       Date:  2010-09-25       Impact factor: 1.082

2.  Intragenomic distribution of RTE retroelements suggests intrachromosomal movement.

Authors:  Eugenia E Montiel; Francisco J Ruiz-Ruano; Josefa Cabrero; Juan Alberto Marchal; Antonio Sánchez; Francisco Perfectti; María Dolores López-León; Juan Pedro M Camacho
Journal:  Chromosome Res       Date:  2015-01-21       Impact factor: 5.239

3.  Microdissection and painting of the Y chromosome in spinach (Spinacia oleracea).

Authors:  Chuan-Liang Deng; Rui-Yun Qin; Ying Cao; Jun Gao; Shu-Fen Li; Wu-Jun Gao; Long-Dou Lu
Journal:  J Plant Res       Date:  2013-02-05       Impact factor: 2.629

4.  Flow sorting and sequencing meadow fescue chromosome 4F.

Authors:  David Kopecký; Mihaela Martis; Jarmila Číhalíková; Eva Hřibová; Jan Vrána; Jan Bartoš; Jitka Kopecká; Federica Cattonaro; Štěpán Stočes; Petr Novák; Pavel Neumann; Jiří Macas; Hana Šimková; Bruno Studer; Torben Asp; James H Baird; Petr Navrátil; Miroslava Karafiátová; Marie Kubaláková; Jan Šafář; Klaus Mayer; Jaroslav Doležel
Journal:  Plant Physiol       Date:  2013-10-04       Impact factor: 8.340

5.  RecoverY: k-mer-based read classification for Y-chromosome-specific sequencing and assembly.

Authors:  Samarth Rangavittal; Robert S Harris; Monika Cechova; Marta Tomaszkiewicz; Rayan Chikhi; Kateryna D Makova; Paul Medvedev
Journal:  Bioinformatics       Date:  2018-04-01       Impact factor: 6.937

6.  Laser microdissection-based analysis of the Y sex chromosome of the Antarctic fish Chionodracohamatus (Notothenioidei, Channichthyidae).

Authors:  Ennio Cocca; Agnese Petraccioli; Maria Alessandra Morescalchi; Gaetano Odierna; Teresa Capriglione
Journal:  Comp Cytogenet       Date:  2015-02-05       Impact factor: 1.800

Review 7.  How Next-Generation Sequencing Has Aided Our Understanding of the Sequence Composition and Origin of B Chromosomes.

Authors:  Alevtina Ruban; Thomas Schmutzer; Uwe Scholz; Andreas Houben
Journal:  Genes (Basel)       Date:  2017-10-25       Impact factor: 4.096

8.  Combined fluorescent-chromogenic in situ hybridization for identification and laser microdissection of interphase chromosomes.

Authors:  Nerea Paz; Amaia Zabala; Félix Royo; África García-Orad; José L Zugaza; Luis A Parada
Journal:  PLoS One       Date:  2013-04-02       Impact factor: 3.240

9.  A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y.

Authors:  Marta Tomaszkiewicz; Samarth Rangavittal; Monika Cechova; Rebeca Campos Sanchez; Howard W Fescemyer; Robert Harris; Danling Ye; Patricia C M O'Brien; Rayan Chikhi; Oliver A Ryder; Malcolm A Ferguson-Smith; Paul Medvedev; Kateryna D Makova
Journal:  Genome Res       Date:  2016-03-02       Impact factor: 9.043

10.  Sequence analysis of cultivated strawberry (Fragaria × ananassa Duch.) using microdissected single somatic chromosomes.

Authors:  Tomohiro Yanagi; Kenta Shirasawa; Mayuko Terachi; Sachiko Isobe
Journal:  Plant Methods       Date:  2017-10-30       Impact factor: 4.993

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