Literature DB >> 18645235

Macromolecular structure solution by charge flipping.

Christian Dumas1, Arie van der Lee.   

Abstract

The recently discovered charge-flipping phasing algorithm has received growing interest in small-molecule crystallography and powder diffraction. This computational methodology differs from classical direct methods as it does not require a priori knowledge of either space-group symmetry or chemical composition and does not rely on probabilistic phase relations. Here, it is shown that the charge-flipping algorithm is capable of solving large macromolecular structures with up to approximately 6000 atoms in the asymmetric unit using suitable normalized intensity data at atomic resolution ( approximately 1.0 A). Moreover, it is demonstrated that this algorithm also provides an efficient tool for the experimental phasing of highly complex heavy-atom or anomalous scattering substructures at medium to low resolution ( approximately 2-6 A) that are frequently difficult to determine using Patterson techniques or direct methods. With the present extension to macromolecular crystallography, charge flipping has proved to be a very well performing and general phase-recovery algorithm in all fields of kinematical diffraction.

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Year:  2008        PMID: 18645235     DOI: 10.1107/S0907444908017381

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  6 in total

Review 1.  Recent developments in phasing and structure refinement for macromolecular crystallography.

Authors:  Paul D Adams; Pavel V Afonine; Ralf W Grosse-Kunstleve; Randy J Read; Jane S Richardson; David C Richardson; Thomas C Terwilliger
Journal:  Curr Opin Struct Biol       Date:  2009-08-21       Impact factor: 6.809

2.  Insights into the regulation of the human COP9 signalosome catalytic subunit, CSN5/Jab1.

Authors:  Aude Echalier; Yunbao Pan; Melissa Birol; Nicolas Tavernier; Lionel Pintard; François Hoh; Christine Ebel; Nathalie Galophe; François X Claret; Christian Dumas
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-03       Impact factor: 11.205

3.  Progress in low-resolution ab initio phasing with CrowdPhase.

Authors:  Julien Jorda; Michael R Sawaya; Todd O Yeates
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-03-01       Impact factor: 7.652

4.  Maximum-likelihood determination of anomalous substructures.

Authors:  Randy J Read; Airlie J McCoy
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-02-01       Impact factor: 7.652

5.  Substructure determination using phase-retrieval techniques.

Authors:  Pavol Skubák
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-02-01       Impact factor: 7.652

6.  The RpfC (Rv1884) atomic structure shows high structural conservation within the resuscitation-promoting factor catalytic domain.

Authors:  Francois Xavier Chauviac; Giles Robertson; Doris H X Quay; Claire Bagnéris; Christian Dumas; Brian Henderson; John Ward; Nicholas H Keep; Martin Cohen-Gonsaud
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-07-23       Impact factor: 1.056

  6 in total

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