Literature DB >> 18643310

Inflation of the edge of chaos in a simple model of gene interaction networks.

Dejan Stokić1, Rudolf Hanel, Stefan Thurner.   

Abstract

We study a set of linearized catalytic reactions to model gene and protein interactions. The model is based on experimentally motivated interaction network topologies and is designed to capture some key properties of gene expression statistics. We impose a nonlinearity to the system by enforcing a boundary condition which guarantees non-negative concentrations of chemical substances. System stability is quantified by maximum Lyapunov exponents. We find that the non-negativity constraint leads to a drastic inflation of those regions in parameter space where the Lyapunov exponent exactly vanishes. Within the model this finding can be fully explained as a result of a symmetry breaking mechanism induced by the positivity constraint. The robustness of this finding with respect to network topologies and the role of intrinsic molecular and external noise is discussed. We argue that systems with inflated "edges of chaos" could be much more easily favored by natural selection than systems where the Lyapunov exponent vanishes only on a parameter set of measure zero.

Mesh:

Year:  2008        PMID: 18643310     DOI: 10.1103/PhysRevE.77.061917

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  4 in total

1.  Molecular signaling network complexity is correlated with cancer patient survivability.

Authors:  Dylan Breitkreutz; Lynn Hlatky; Edward Rietman; Jack A Tuszynski
Journal:  Proc Natl Acad Sci U S A       Date:  2012-05-21       Impact factor: 11.205

2.  A self-organized model for cell-differentiation based on variations of molecular decay rates.

Authors:  Rudolf Hanel; Manfred Pöchacker; Manuel Schölling; Stefan Thurner
Journal:  PLoS One       Date:  2012-05-31       Impact factor: 3.240

3.  A fast and efficient gene-network reconstruction method from multiple over-expression experiments.

Authors:  Dejan Stokić; Rudolf Hanel; Stefan Thurner
Journal:  BMC Bioinformatics       Date:  2009-08-17       Impact factor: 3.169

Review 4.  The capabilities of chaos and complexity.

Authors:  David L Abel
Journal:  Int J Mol Sci       Date:  2009-01-09       Impact factor: 6.208

  4 in total

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