Literature DB >> 18641626

Cooperativity in macromolecular assembly.

James R Williamson1.   

Abstract

The thermodynamic principle of cooperativity is used to drive the formation of specific macromolecular complexes during the assembly of a macromolecular machine. Understanding cooperativity provides insight into the mechanisms that govern assembly and disassembly of multicomponent complexes. Our understanding of assembly mechanisms is lagging considerably behind our understanding of the structure and function of these complexes. A significant challenge remains in tackling the thermodynamics and kinetics of the intermolecular interactions required for all cellular functions.

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Year:  2008        PMID: 18641626     DOI: 10.1038/nchembio.102

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  54 in total

1.  Optimizing ring assembly reveals the strength of weak interactions.

Authors:  Eric J Deeds; John A Bachman; Walter Fontana
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-30       Impact factor: 11.205

2.  HIV Rev response element (RRE) directs assembly of the Rev homooligomer into discrete asymmetric complexes.

Authors:  Matthew D Daugherty; David S Booth; Bhargavi Jayaraman; Yifan Cheng; Alan D Frankel
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-28       Impact factor: 11.205

Review 3.  Advances in coarse-grained modeling of macromolecular complexes.

Authors:  Alexander J Pak; Gregory A Voth
Journal:  Curr Opin Struct Biol       Date:  2018-11-30       Impact factor: 6.809

Review 4.  Molecular mechanisms of proteasome assembly.

Authors:  Shigeo Murata; Hideki Yashiroda; Keiji Tanaka
Journal:  Nat Rev Mol Cell Biol       Date:  2009-02       Impact factor: 94.444

5.  Order parameters for macromolecules: application to multiscale simulation.

Authors:  A Singharoy; S Cheluvaraja; P Ortoleva
Journal:  J Chem Phys       Date:  2011-01-28       Impact factor: 3.488

6.  Kinetic cooperativity in Escherichia coli 30S ribosomal subunit reconstitution reveals additional complexity in the assembly landscape.

Authors:  Anne E Bunner; Andrea H Beck; James R Williamson
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-05       Impact factor: 11.205

7.  Nuclear pore complex protein sequences determine overall copolymer brush structure and function.

Authors:  David Ando; Roya Zandi; Yong Woon Kim; Michael Colvin; Michael Rexach; Ajay Gopinathan
Journal:  Biophys J       Date:  2014-05-06       Impact factor: 4.033

8.  Structural basis for cooperative RNA binding and export complex assembly by HIV Rev.

Authors:  Matthew D Daugherty; Bella Liu; Alan D Frankel
Journal:  Nat Struct Mol Biol       Date:  2010-10-17       Impact factor: 15.369

9.  Information theoretical quantification of cooperativity in signalling complexes.

Authors:  Tom Lenaerts; Jesper Ferkinghoff-Borg; Joost Schymkowitz; Frederic Rousseau
Journal:  BMC Syst Biol       Date:  2009-01-16

10.  ELM: the status of the 2010 eukaryotic linear motif resource.

Authors:  Cathryn M Gould; Francesca Diella; Allegra Via; Pål Puntervoll; Christine Gemünd; Sophie Chabanis-Davidson; Sushama Michael; Ahmed Sayadi; Jan Christian Bryne; Claudia Chica; Markus Seiler; Norman E Davey; Niall Haslam; Robert J Weatheritt; Aidan Budd; Tim Hughes; Jakub Pas; Leszek Rychlewski; Gilles Travé; Rein Aasland; Manuela Helmer-Citterich; Rune Linding; Toby J Gibson
Journal:  Nucleic Acids Res       Date:  2009-11-17       Impact factor: 16.971

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