Literature DB >> 18635956

Systems biology of mammalian cell division.

Ralf Kittler1, Laurence Pelletier, Frank Buchholz.   

Abstract

High-throughput screening technologies allow the identification of genes and proteins essential for mammalian cell division. However, the underlying complexity and connectivity of different biological processes, such as signal transduction, transcription, translation and proteolysis make it difficult to understand the mammalian cell cycle based on the analysis of its individual components alone. The recent development of robust and precise assays to study the mammalian cell cycle, in combination with functional genomics and proteomics, together provide the necessary tools to address this critical issue. With the implementation of different "Omics" technologies for quantitative and high-throughput data acquisition, the possibility of obtaining a more detailed view of the mammalian cell cycle is now realistic. Here, we review RNAi reagents, assays and validation strategies for the identification of genes functioning in the human cell cycle, and outline genomic, proteomic and microscopic approaches to further characterize their specific functions. While a fully integrated model of mammalian cell division remains a distant goal, a framework of a systems understanding of this medically relevant process is beginning to emerge.

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Year:  2008        PMID: 18635956     DOI: 10.4161/cc.7.14.6322

Source DB:  PubMed          Journal:  Cell Cycle        ISSN: 1551-4005            Impact factor:   4.534


  5 in total

1.  MISSION esiRNA for RNAi screening in mammalian cells.

Authors:  Mirko Theis; Frank Buchholz
Journal:  J Vis Exp       Date:  2010-05-12       Impact factor: 1.355

2.  Systematic analysis of human protein complexes identifies chromosome segregation proteins.

Authors:  James R A Hutchins; Yusuke Toyoda; Björn Hegemann; Ina Poser; Jean-Karim Hériché; Martina M Sykora; Martina Augsburg; Otto Hudecz; Bettina A Buschhorn; Jutta Bulkescher; Christian Conrad; David Comartin; Alexander Schleiffer; Mihail Sarov; Andrei Pozniakovsky; Mikolaj Michal Slabicki; Siegfried Schloissnig; Ines Steinmacher; Marit Leuschner; Andrea Ssykor; Steffen Lawo; Laurence Pelletier; Holger Stark; Kim Nasmyth; Jan Ellenberg; Richard Durbin; Frank Buchholz; Karl Mechtler; Anthony A Hyman; Jan-Michael Peters
Journal:  Science       Date:  2010-04-01       Impact factor: 47.728

Review 3.  Vigilance and validation: Keys to success in RNAi screening.

Authors:  Frederic D Sigoillot; Randall W King
Journal:  ACS Chem Biol       Date:  2010-12-28       Impact factor: 5.100

4.  ATARiS: computational quantification of gene suppression phenotypes from multisample RNAi screens.

Authors:  Diane D Shao; Aviad Tsherniak; Shuba Gopal; Barbara A Weir; Pablo Tamayo; Nicolas Stransky; Steven E Schumacher; Travis I Zack; Rameen Beroukhim; Levi A Garraway; Adam A Margolin; David E Root; William C Hahn; Jill P Mesirov
Journal:  Genome Res       Date:  2012-12-26       Impact factor: 9.043

5.  Comparative profiling identifies C13orf3 as a component of the Ska complex required for mammalian cell division.

Authors:  Mirko Theis; Mikolaj Slabicki; Magno Junqueira; Maciej Paszkowski-Rogacz; Jana Sontheimer; Ralf Kittler; Anne-Kristine Heninger; Timo Glatter; Kristi Kruusmaa; Ina Poser; Anthony A Hyman; M Teresa Pisabarro; Matthias Gstaiger; Rudolf Aebersold; Andrej Shevchenko; Frank Buchholz
Journal:  EMBO J       Date:  2009-04-23       Impact factor: 11.598

  5 in total

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