Literature DB >> 20360068

Systematic analysis of human protein complexes identifies chromosome segregation proteins.

James R A Hutchins1, Yusuke Toyoda, Björn Hegemann, Ina Poser, Jean-Karim Hériché, Martina M Sykora, Martina Augsburg, Otto Hudecz, Bettina A Buschhorn, Jutta Bulkescher, Christian Conrad, David Comartin, Alexander Schleiffer, Mihail Sarov, Andrei Pozniakovsky, Mikolaj Michal Slabicki, Siegfried Schloissnig, Ines Steinmacher, Marit Leuschner, Andrea Ssykor, Steffen Lawo, Laurence Pelletier, Holger Stark, Kim Nasmyth, Jan Ellenberg, Richard Durbin, Frank Buchholz, Karl Mechtler, Anthony A Hyman, Jan-Michael Peters.   

Abstract

Chromosome segregation and cell division are essential, highly ordered processes that depend on numerous protein complexes. Results from recent RNA interference screens indicate that the identity and composition of these protein complexes is incompletely understood. Using gene tagging on bacterial artificial chromosomes, protein localization, and tandem-affinity purification-mass spectrometry, the MitoCheck consortium has analyzed about 100 human protein complexes, many of which had not or had only incompletely been characterized. This work has led to the discovery of previously unknown, evolutionarily conserved subunits of the anaphase-promoting complex and the gamma-tubulin ring complex--large complexes that are essential for spindle assembly and chromosome segregation. The approaches we describe here are generally applicable to high-throughput follow-up analyses of phenotypic screens in mammalian cells.

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Year:  2010        PMID: 20360068      PMCID: PMC2989461          DOI: 10.1126/science.1181348

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  28 in total

1.  Functional genomic analysis of cell division in C. elegans using RNAi of genes on chromosome III.

Authors:  P Gönczy; C Echeverri; K Oegema; A Coulson; S J Jones; R R Copley; J Duperon; J Oegema; M Brehm; E Cassin; E Hannak; M Kirkham; S Pichler; K Flohrs; A Goessen; S Leidel; A M Alleaume; C Martin; N Ozlü; P Bork; A A Hyman
Journal:  Nature       Date:  2000-11-16       Impact factor: 49.962

2.  Global analysis of protein localization in budding yeast.

Authors:  Won-Ki Huh; James V Falvo; Luke C Gerke; Adam S Carroll; Russell W Howson; Jonathan S Weissman; Erin K O'Shea
Journal:  Nature       Date:  2003-10-16       Impact factor: 49.962

3.  Proteomic characterization of the human centrosome by protein correlation profiling.

Authors:  Jens S Andersen; Christopher J Wilkinson; Thibault Mayor; Peter Mortensen; Erich A Nigg; Matthias Mann
Journal:  Nature       Date:  2003-12-04       Impact factor: 49.962

4.  gamma-Tubulin.

Authors:  Urvashi Patel; Tim Stearns
Journal:  Curr Biol       Date:  2002-06-25       Impact factor: 10.834

5.  HAUS, the 8-subunit human Augmin complex, regulates centrosome and spindle integrity.

Authors:  Steffen Lawo; Mikhail Bashkurov; Michael Mullin; Mariana Gomez Ferreria; Ralf Kittler; Bianca Habermann; Andrea Tagliaferro; Ina Poser; James R A Hutchins; Björn Hegemann; Deborah Pinchev; Frank Buchholz; Jan-Michael Peters; Anthony A Hyman; Anne-Claude Gingras; Laurence Pelletier
Journal:  Curr Biol       Date:  2009-05-07       Impact factor: 10.834

6.  The Pfam protein families database.

Authors:  Robert D Finn; Jaina Mistry; John Tate; Penny Coggill; Andreas Heger; Joanne E Pollington; O Luke Gavin; Prasad Gunasekaran; Goran Ceric; Kristoffer Forslund; Liisa Holm; Erik L L Sonnhammer; Sean R Eddy; Alex Bateman
Journal:  Nucleic Acids Res       Date:  2009-11-17       Impact factor: 16.971

7.  Global analysis of protein expression in yeast.

Authors:  Sina Ghaemmaghami; Won-Ki Huh; Kiowa Bower; Russell W Howson; Archana Belle; Noah Dephoure; Erin K O'Shea; Jonathan S Weissman
Journal:  Nature       Date:  2003-10-16       Impact factor: 49.962

8.  A new logic for DNA engineering using recombination in Escherichia coli.

Authors:  Y Zhang; F Buchholz; J P Muyrers; A F Stewart
Journal:  Nat Genet       Date:  1998-10       Impact factor: 38.330

9.  Systematic functional analysis of the Caenorhabditis elegans genome using RNAi.

Authors:  Ravi S Kamath; Andrew G Fraser; Yan Dong; Gino Poulin; Richard Durbin; Monica Gotta; Alexander Kanapin; Nathalie Le Bot; Sergio Moreno; Marc Sohrmann; David P Welchman; Peder Zipperlen; Julie Ahringer
Journal:  Nature       Date:  2003-01-16       Impact factor: 49.962

10.  Aurora-A kinase is required for centrosome maturation in Caenorhabditis elegans.

Authors:  E Hannak; M Kirkham; A A Hyman; K Oegema
Journal:  J Cell Biol       Date:  2001-12-17       Impact factor: 10.539

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  278 in total

1.  Misshapen-like kinase 1 (MINK1) is a novel component of striatin-interacting phosphatase and kinase (STRIPAK) and is required for the completion of cytokinesis.

Authors:  Toshinori Hyodo; Satoko Ito; Hitoki Hasegawa; Eri Asano; Masao Maeda; Takeshi Urano; Masahide Takahashi; Michinari Hamaguchi; Takeshi Senga
Journal:  J Biol Chem       Date:  2012-06-04       Impact factor: 5.157

Review 2.  Next-generation genomics: an integrative approach.

Authors:  R David Hawkins; Gary C Hon; Bing Ren
Journal:  Nat Rev Genet       Date:  2010-07       Impact factor: 53.242

3.  Augmented annotation of the Schizosaccharomyces pombe genome reveals additional genes required for growth and viability.

Authors:  Danny A Bitton; Valerie Wood; Paul J Scutt; Agnes Grallert; Tim Yates; Duncan L Smith; Iain M Hagan; Crispin J Miller
Journal:  Genetics       Date:  2011-01-26       Impact factor: 4.562

Review 4.  Structural insights into anaphase-promoting complex function and mechanism.

Authors:  David Barford
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-12-27       Impact factor: 6.237

5.  Cep57, a NEDD1-binding pericentriolar material component, is essential for spindle pole integrity.

Authors:  Qixi Wu; Runsheng He; Haining Zhou; Albert C H Yu; Bo Zhang; Junlin Teng; Jianguo Chen
Journal:  Cell Res       Date:  2012-04-17       Impact factor: 25.617

6.  Combined RNAi and localization for functionally dissecting long noncoding RNAs.

Authors:  Debojyoti Chakraborty; Dennis Kappei; Mirko Theis; Anja Nitzsche; Li Ding; Maciej Paszkowski-Rogacz; Vineeth Surendranath; Nicolas Berger; Herbert Schulz; Kathrin Saar; Norbert Hubner; Frank Buchholz
Journal:  Nat Methods       Date:  2012-02-12       Impact factor: 28.547

7.  RED, a spindle pole-associated protein, is required for kinetochore localization of MAD1, mitotic progression, and activation of the spindle assembly checkpoint.

Authors:  Pei-Chi Yeh; Chang-Ching Yeh; Yi-Cheng Chen; Yue-Li Juang
Journal:  J Biol Chem       Date:  2012-02-18       Impact factor: 5.157

8.  Topographic studies of the GroEL-GroES chaperonin complex by chemical cross-linking using diformyl ethynylbenzene: the power of high resolution electron transfer dissociation for determination of both peptide sequences and their attachment sites.

Authors:  Michael J Trnka; A L Burlingame
Journal:  Mol Cell Proteomics       Date:  2010-09-02       Impact factor: 5.911

9.  Quantitative Assessment of the Effects of Trypsin Digestion Methods on Affinity Purification-Mass Spectrometry-based Protein-Protein Interaction Analysis.

Authors:  Yueqing Zhang; Hong Sun; Jing Zhang; Allan R Brasier; Yingxin Zhao
Journal:  J Proteome Res       Date:  2017-07-20       Impact factor: 4.466

Review 10.  Network analysis of GWAS data.

Authors:  Mark D M Leiserson; Jonathan V Eldridge; Sohini Ramachandran; Benjamin J Raphael
Journal:  Curr Opin Genet Dev       Date:  2013-11-26       Impact factor: 5.578

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