Literature DB >> 18630857

Special pair dance and partner selection: elementary steps in proton transport in liquid water.

Omer Markovitch1, Hanning Chen, Sergei Izvekov, Francesco Paesani, Gregory A Voth, Noam Agmon.   

Abstract

Conditional and time-dependent radial distribution functions reveal the details of the water structure surrounding the hydronium during the proton mobility process. Using this methodology for classical multistate empirical valence bond (MS-EVB) and ab initio molecular dynamics trajectories, as well as quantal MS-EVB trajectories, we supply statistical proof that proton hops in liquid water occur by a transition from the H3O+[3H2O] Eigen-complex, via the H5O2+ Zundel-complex, to a H3O+[3H2O] centered on a neighboring water molecule. In the "resting period" before a transition, there is a distorted hydronium with one of its water ligands at a shorter distance and another at a longer distance than average. The identity of this "special partner" interchanges rapidly within the three first-shell water ligands. This is coupled to cleavage of an acceptor-type hydrogen bond. Just before the transition, a partner is selected by an additional translation of the H3O+ moiety in its direction, possibly enabled by loosening of donor-type hydrogen bonds on the opposite side. We monitor the transition in real time, showing how the average structure is converted to a distorted H5O2+ cation constituting the transitional complex for proton hopping between water molecules.

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Year:  2008        PMID: 18630857     DOI: 10.1021/jp804018y

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  38 in total

1.  The mobile proton hypothesis in fragmentation of protonated peptides: a perspective.

Authors:  Robert Boyd; Arpád Somogyi
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Review 2.  Philosophy of voltage-gated proton channels.

Authors:  Thomas E DeCoursey; Jonathan Hosler
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3.  Proton transfer through the water gossamer.

Authors:  Ali Hassanali; Federico Giberti; Jérôme Cuny; Thomas D Kühne; Michele Parrinello
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-18       Impact factor: 11.205

4.  Multiscale reactive molecular dynamics.

Authors:  Chris Knight; Gerrick E Lindberg; Gregory A Voth
Journal:  J Chem Phys       Date:  2012-12-14       Impact factor: 3.488

5.  A 'clusters-in-liquid' method for calculating infrared spectra identifies the proton-transfer mode in acidic aqueous solutions.

Authors:  Waldemar Kulig; Noam Agmon
Journal:  Nat Chem       Date:  2012-11-25       Impact factor: 24.427

Review 6.  Voltage-gated proton channels: molecular biology, physiology, and pathophysiology of the H(V) family.

Authors:  Thomas E DeCoursey
Journal:  Physiol Rev       Date:  2013-04       Impact factor: 37.312

7.  Energetics and dynamics of proton transfer reactions along short water wires.

Authors:  Ville R I Kaila; Gerhard Hummer
Journal:  Phys Chem Chem Phys       Date:  2011-06-23       Impact factor: 3.676

8.  Biophysical properties of the voltage gated proton channel H(V)1.

Authors:  Boris Musset; Thomas Decoursey
Journal:  Wiley Interdiscip Rev Membr Transp Signal       Date:  2012-05-11

9.  Proton defect solvation and dynamics in aqueous acid and base.

Authors:  Seyit Kale; Judith Herzfeld
Journal:  Angew Chem Int Ed Engl       Date:  2012-10-04       Impact factor: 15.336

10.  Photoaffinity labeling via nitrenium ion chemistry: protonation of the nitrene derived from 4-amino-3-nitrophenyl azide to afford reactive nitrenium ion pairs.

Authors:  Valentyna Voskresenska; R Marshall Wilson; Maxim Panov; Alexander N Tarnovsky; Jeanette A Krause; Shubham Vyas; Arthur H Winter; Christopher M Hadad
Journal:  J Am Chem Soc       Date:  2009-08-19       Impact factor: 15.419

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