Literature DB >> 18629255

Learning about gene regulatory networks from gene deletion experiments.

Thomas Schlitt1, Alvis Brazma.   

Abstract

Gene regulatory networks are a major focus of interest in molecular biology. A crucial question is how complex regulatory systems are encoded and controlled by the genome. Three recent publications have raised the question of what can be learned about gene regulatory networks from microarray experiments on gene deletion mutants. Using this indirect approach, topological features such as connectivity and modularity have been studied.

Year:  2002        PMID: 18629255      PMCID: PMC2448417          DOI: 10.1002/cfg.220

Source DB:  PubMed          Journal:  Comp Funct Genomics        ISSN: 1531-6912


  18 in total

1.  The modularity of biological regulatory networks.

Authors:  D Thieffry; D Romero
Journal:  Biosystems       Date:  1999-04       Impact factor: 1.973

2.  Functional discovery via a compendium of expression profiles.

Authors:  T R Hughes; M J Marton; A R Jones; C J Roberts; R Stoughton; C D Armour; H A Bennett; E Coffey; H Dai; Y D He; M J Kidd; A M King; M R Meyer; D Slade; P Y Lum; S B Stepaniants; D D Shoemaker; D Gachotte; K Chakraburtty; J Simon; M Bard; S H Friend
Journal:  Cell       Date:  2000-07-07       Impact factor: 41.582

3.  Specificity and stability in topology of protein networks.

Authors:  Sergei Maslov; Kim Sneppen
Journal:  Science       Date:  2002-05-03       Impact factor: 47.728

Review 4.  Deciphering gene expression regulatory networks.

Authors:  John J Wyrick; Richard A Young
Journal:  Curr Opin Genet Dev       Date:  2002-04       Impact factor: 5.578

5.  Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast.

Authors:  J Park; M Lappe; S A Teichmann
Journal:  J Mol Biol       Date:  2001-03-30       Impact factor: 5.469

6.  From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli.

Authors:  D Thieffry; A M Huerta; E Pérez-Rueda; J Collado-Vides
Journal:  Bioessays       Date:  1998-05       Impact factor: 4.345

7.  Estimating coarse gene network structure from large-scale gene perturbation data.

Authors:  Andreas Wagner
Journal:  Genome Res       Date:  2002-02       Impact factor: 9.043

8.  Circuit simulation of genetic networks.

Authors:  H H McAdams; L Shapiro
Journal:  Science       Date:  1995-08-04       Impact factor: 47.728

Review 9.  Genetic and developmental bases of serial homology in vertebrate limb evolution.

Authors:  I Ruvinsky; J J Gibson-Brown
Journal:  Development       Date:  2000-12       Impact factor: 6.868

10.  Correlation of wing-leg identity in ectopic FGF-induced chimeric limbs with the differential expression of chick Tbx5 and Tbx4.

Authors:  H Ohuchi; J Takeuchi; H Yoshioka; Y Ishimaru; K Ogura; N Takahashi; T Ogura; S Noji
Journal:  Development       Date:  1998-01       Impact factor: 6.868

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  3 in total

Review 1.  Modelling in molecular biology: describing transcription regulatory networks at different scales.

Authors:  Thomas Schlitt; Alvis Brazma
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-03-29       Impact factor: 6.237

2.  From gene networks to gene function.

Authors:  Thomas Schlitt; Kimmo Palin; Johan Rung; Sabine Dietmann; Michael Lappe; Esko Ukkonen; Alvis Brazma
Journal:  Genome Res       Date:  2003-12       Impact factor: 9.043

3.  Current approaches to gene regulatory network modelling.

Authors:  Thomas Schlitt; Alvis Brazma
Journal:  BMC Bioinformatics       Date:  2007-09-27       Impact factor: 3.169

  3 in total

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