Literature DB >> 11893484

Deciphering gene expression regulatory networks.

John J Wyrick1, Richard A Young.   

Abstract

In the past year, great strides have been made in our understanding of the regulatory networks that control gene expression in the model eukaryote Saccharomyces cerevisiae. The development and use of a number of genomic tools, including genome-wide location and expression analysis, has fueled this progress. In addition, a variety of computational algorithms have been devised to mine genomic sequence for conserved regulatory motifs in co-regulated genes. The recent description of the genetic network controlling the cell cycle illustrates the tremendous potential of these approaches for deciphering gene expression regulatory networks in eukaryotic cells.

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Year:  2002        PMID: 11893484     DOI: 10.1016/s0959-437x(02)00277-0

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  59 in total

1.  Statistical resynchronization and Bayesian detection of periodically expressed genes.

Authors:  Xin Lu; Wen Zhang; Zhaohui S Qin; Kurt E Kwast; Jun S Liu
Journal:  Nucleic Acids Res       Date:  2004-01-22       Impact factor: 16.971

2.  Reconciling gene expression data with known genome-scale regulatory network structures.

Authors:  Markus J Herrgård; Markus W Covert; Bernhard Ø Palsson
Journal:  Genome Res       Date:  2003-10-14       Impact factor: 9.043

3.  Kinetic profiles of p300 occupancy in vivo predict common features of promoter structure and coactivator recruitment.

Authors:  James L Smith; Wendy J Freebern; Irene Collins; Adriana De Siervi; Idalia Montano; Cynthia M Haggerty; Markey C McNutt; Wayne G Butscher; Inna Dzekunova; David W Petersen; Ernest Kawasaki; Juanita L Merchant; Kevin Gardner
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-30       Impact factor: 11.205

4.  Comparative analysis of dioxin response elements in human, mouse and rat genomic sequences.

Authors:  Y V Sun; D R Boverhof; L D Burgoon; M R Fielden; T R Zacharewski
Journal:  Nucleic Acids Res       Date:  2004-08-24       Impact factor: 16.971

Review 5.  Charting gene regulatory networks: strategies, challenges and perspectives.

Authors:  Gong-Hong Wei; De-Pei Liu; Chih-Chuan Liang
Journal:  Biochem J       Date:  2004-07-01       Impact factor: 3.857

6.  On the minimization of fluctuations in the response times of autoregulatory gene networks.

Authors:  Rajamanickam Murugan; Gabriel Kreiman
Journal:  Biophys J       Date:  2011-09-20       Impact factor: 4.033

7.  Genome-wide identification of cis-regulatory motifs and modules underlying gene coregulation using statistics and phylogeny.

Authors:  Hervé Rouault; Khalil Mazouni; Lydie Couturier; Vincent Hakim; François Schweisguth
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-29       Impact factor: 11.205

8.  Gene network polymorphism is the raw material of natural selection: the selfish gene network hypothesis.

Authors:  Zsolt Boldogköi
Journal:  J Mol Evol       Date:  2004-09       Impact factor: 2.395

Review 9.  Protein binding microarrays for the characterization of DNA-protein interactions.

Authors:  Martha L Bulyk
Journal:  Adv Biochem Eng Biotechnol       Date:  2007       Impact factor: 2.635

10.  The embryo MADS domain protein AGAMOUS-Like 15 directly regulates expression of a gene encoding an enzyme involved in gibberellin metabolism.

Authors:  Huai Wang; Leonardo V Caruso; A Bruce Downie; Sharyn E Perry
Journal:  Plant Cell       Date:  2004-04-14       Impact factor: 11.277

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