Literature DB >> 18629131

Global analysis of cell type-specific gene expression.

David W Galbraith1.   

Abstract

The tissues and organs of multicellular eukaryotes are frequently observed to comprise complex three-dimensional interspersions of different cell types. It is a reasonable assumption that different global patterns of gene expression are found within these different cell types. This review outlines general experimental strategies designed to characterize these global gene expression patterns, based on a combination of methods of transgenic fluorescent protein (FP) expression and targeting, of flow cytometry and sorting and of high-throughput gene expression analysis.

Year:  2003        PMID： 18629131      PMCID： PMC2447418          DOI： 10.1002/cfg.281

Source DB:  PubMed          Journal:  Comp Funct Genomics        ISSN： 1531-6912


  32 in total

Review 1.  High-density microarrays for gene expression analysis.

Authors:  M K Deyholos; D W Galbraith
Journal:  Cytometry       Date:  2001-04-01

2.  Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays.

Authors:  S Brenner; M Johnson; J Bridgham; G Golda; D H Lloyd; D Johnson; S Luo; S McCurdy; M Foy; M Ewan; R Roth; D George; S Eletr; G Albrecht; E Vermaas; S R Williams; K Moon; T Burcham; M Pallas; R B DuBridge; J Kirchner; K Fearon; J Mao; K Corcoran
Journal:  Nat Biotechnol       Date:  2000-06       Impact factor: 54.908

3.  In vitro cloning of complex mixtures of DNA on microbeads: physical separation of differentially expressed cDNAs.

Authors:  S Brenner; S R Williams; E H Vermaas; T Storck; K Moon; C McCollum; J I Mao; S Luo; J J Kirchner; S Eletr; R B DuBridge; T Burcham; G Albrecht
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-15       Impact factor: 11.205

4.  Four-color flow cytometric detection of retrovirally expressed red, yellow, green, and cyan fluorescent proteins.

Authors:  T S Hawley; W G Telford; A Ramezani; R G Hawley
Journal:  Biotechniques       Date:  2001-05       Impact factor: 1.993

5.  Analysis of variance for gene expression microarray data.

Authors:  M K Kerr; M Martin; G A Churchill
Journal:  J Comput Biol       Date:  2000       Impact factor: 1.479

6.  Rapid flow cytometric analysis of the cell cycle in intact plant tissues.

Authors:  D W Galbraith; K R Harkins; J M Maddox; N M Ayres; D P Sharma; E Firoozabady
Journal:  Science       Date:  1983-06-03       Impact factor: 47.728

7.  Nuclear expressed sequence Tag (NEST) analysis: a novel means to study transcription through amplification of nuclear RNA.

Authors:  J Macas; G M Lambert; D Dolezel; D W Galbraith
Journal:  Cytometry       Date:  1998-12-01

8.  Microarray-based analysis of gene expression in very large gene families: the cytochrome P450 gene superfamily of Arabidopsis thaliana.

Authors:  W Xu; S Bak; A Decker; S M Paquette; R Feyereisen; D W Galbraith
Journal:  Gene       Date:  2001-07-11       Impact factor: 3.688

9.  Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array.

Authors:  S Singh-Gasson; R D Green; Y Yue; C Nelson; F Blattner; M R Sussman; F Cerrina
Journal:  Nat Biotechnol       Date:  1999-10       Impact factor: 54.908

10.  Intercellular movement of the putative transcription factor SHR in root patterning.

Authors:  K Nakajima; G Sena; T Nawy; P N Benfey
Journal:  Nature       Date:  2001-09-20       Impact factor: 49.962
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  12 in total

Review 1.  Methods for transcriptional profiling in plants. Be fruitful and replicate.

Authors:  Blake C Meyers; David W Galbraith; Timothy Nelson; Vikas Agrawal
Journal:  Plant Physiol       Date:  2004-06-01       Impact factor: 8.340

2.  The use of MPSS for whole-genome transcriptional analysis in Arabidopsis.

Authors:  Blake C Meyers; Shivakundan Singh Tej; Tam H Vu; Christian D Haudenschild; Vikas Agrawal; Steve B Edberg; Hassan Ghazal; Shannon Decola
Journal:  Genome Res       Date:  2004-08       Impact factor: 9.043

Review 3.  The bioinformatics challenges in comparative analysis of cereal genomes-an overview.

Authors:  M Bellgard; Jia Ye; T Gojobori; R Appels
Journal:  Funct Integr Genomics       Date:  2004-02-10       Impact factor: 3.410

4.  Variations in CYP74B2 (hydroperoxide lyase) gene expression differentially affect hexenal signaling in the Columbia and Landsberg erecta ecotypes of Arabidopsis.

Authors:  Hui Duan; Meng-Yu Huang; Kathryn Palacio; Mary A Schuler
Journal:  Plant Physiol       Date:  2005-10-28       Impact factor: 8.340

5.  Immunopurification of polyribosomal complexes of Arabidopsis for global analysis of gene expression.

Authors:  María Eugenia Zanetti; Ing-Feng Chang; Fangcheng Gong; David W Galbraith; Julia Bailey-Serres
Journal:  Plant Physiol       Date:  2005-06       Impact factor: 8.340

6.  Transcriptional profiling of sorghum induced by methyl jasmonate, salicylic acid, and aminocyclopropane carboxylic acid reveals cooperative regulation and novel gene responses.

Authors:  Ron A Salzman; Jeff A Brady; Scott A Finlayson; Christina D Buchanan; Elizabeth J Summer; Feng Sun; Patricia E Klein; Robert R Klein; Lee H Pratt; Marie-Michèle Cordonnier-Pratt; John E Mullet
Journal:  Plant Physiol       Date:  2005-04-29       Impact factor: 8.340

7.  Salt cress. A halophyte and cryophyte Arabidopsis relative model system and its applicability to molecular genetic analyses of growth and development of extremophiles.

Authors:  Günsu Inan; Quan Zhang; Pinghua Li; Zenglan Wang; Ziyi Cao; Hui Zhang; Changqing Zhang; Tanya M Quist; S Mark Goodwin; Jianhua Zhu; Huazhong Shi; Barbara Damsz; Tarif Charbaji; Qingqiu Gong; Shisong Ma; Mark Fredricksen; David W Galbraith; Matthew A Jenks; David Rhodes; Paul M Hasegawa; Hans J Bohnert; Robert J Joly; Ray A Bressan; Jian-Kang Zhu
Journal:  Plant Physiol       Date:  2004-07-09       Impact factor: 8.340

8.  Clinical application of modified bag-of-features coupled with hybrid neural-based classifier in dengue fever classification using gene expression data.

Authors:  Sankhadeep Chatterjee; Nilanjan Dey; Fuqian Shi; Amira S Ashour; Simon James Fong; Soumya Sen
Journal:  Med Biol Eng Comput       Date:  2017-09-11       Impact factor: 2.602

9.  Resistance to Plasmopara viticola in a grapevine segregating population is associated with stilbenoid accumulation and with specific host transcriptional responses.

Authors:  Giulia Malacarne; Urska Vrhovsek; Luca Zulini; Alessandro Cestaro; Marco Stefanini; Fulvio Mattivi; Massimo Delledonne; Riccardo Velasco; Claudio Moser
Journal:  BMC Plant Biol       Date:  2011-08-12       Impact factor: 4.215

10.  Evaluation of global RNA amplification and its use for high-throughput transcript analysis of laser-microdissected endosperm.

Authors:  Robert C Day; Les McNoe; Richard C Macknight
Journal:  Int J Plant Genomics       Date:  2007
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