Literature DB >> 18629102

The HUPO Proteomics Standards Initiative Meeting: Towards Common Standards for Exchanging Proteomics Data.

Sandra Orchard1, Paul Kersey, Henning Hermjakob, Rolf Apweiler.   

Abstract

The Proteomics Standards Initiative (PSI) aims to define community standards for data representation in proteomics and to facilitate data comparison, exchange and verification. Initially the fields of protein-protein interactions (PPI) and mass spectroscopy have been targeted and the inaugural meeting of the PSI addressed the questions of data storage and exchange in both of these areas. The PPI group rapidly reached consensus as to the minimum requirements for a data exchange model; an XML draft is now being produced. The mass spectroscopy group have achieved major advances in the definition of a required data model and working groups are currently taking these discussions further. A further meeting is planned in January 2003 to advance both these projects.

Year:  2003        PMID: 18629102      PMCID: PMC2447389          DOI: 10.1002/cfg.232

Source DB:  PubMed          Journal:  Comp Funct Genomics        ISSN: 1531-6912


  8 in total

Review 1.  Genome informatics: current status and future prospects.

Authors:  Raimond L Winslow; Mark S Boguski
Journal:  Circ Res       Date:  2003-05-16       Impact factor: 17.367

2.  The ProteoRed MIAPE web toolkit: a user-friendly framework to connect and share proteomics standards.

Authors:  J Alberto Medina-Aunon; Salvador Martínez-Bartolomé; Miguel A López-García; Emilio Salazar; Rosana Navajas; Andrew R Jones; Alberto Paradela; Juan P Albar
Journal:  Mol Cell Proteomics       Date:  2011-10       Impact factor: 5.911

Review 3.  Advances and Utility of the Human Plasma Proteome.

Authors:  Eric W Deutsch; Gilbert S Omenn; Zhi Sun; Michal Maes; Maria Pernemalm; Krishnan K Palaniappan; Natasha Letunica; Yves Vandenbrouck; Virginie Brun; Sheng-Ce Tao; Xiaobo Yu; Philipp E Geyer; Vera Ignjatovic; Robert L Moritz; Jochen M Schwenk
Journal:  J Proteome Res       Date:  2021-10-21       Impact factor: 5.370

4.  Update on chloroplast proteomics.

Authors:  Wolfgang P Schröder; Thomas Kieselbach
Journal:  Photosynth Res       Date:  2003       Impact factor: 3.429

5.  PepSeeker: a database of proteome peptide identifications for investigating fragmentation patterns.

Authors:  Thomas McLaughlin; Jennifer A Siepen; Julian Selley; Jennifer A Lynch; King Wai Lau; Hujun Yin; Simon J Gaskell; Simon J Hubbard
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

6.  Proposal for a standard representation of two-dimensional gel electrophoresis data.

Authors:  Andrew Jones; Jonathan Wastling; Ela Hunt
Journal:  Comp Funct Genomics       Date:  2003

7.  COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access.

Authors:  Reza M Salek; Steffen Neumann; Daniel Schober; Jan Hummel; Kenny Billiau; Joachim Kopka; Elon Correa; Theo Reijmers; Antonio Rosato; Leonardo Tenori; Paola Turano; Silvia Marin; Catherine Deborde; Daniel Jacob; Dominique Rolin; Benjamin Dartigues; Pablo Conesa; Kenneth Haug; Philippe Rocca-Serra; Steve O'Hagan; Jie Hao; Michael van Vliet; Marko Sysi-Aho; Christian Ludwig; Jildau Bouwman; Marta Cascante; Timothy Ebbels; Julian L Griffin; Annick Moing; Macha Nikolski; Matej Oresic; Susanna-Assunta Sansone; Mark R Viant; Royston Goodacre; Ulrich L Günther; Thomas Hankemeier; Claudio Luchinat; Dirk Walther; Christoph Steinbeck
Journal:  Metabolomics       Date:  2015-05-26       Impact factor: 4.290

8.  A new reference implementation of the PSICQUIC web service.

Authors:  Noemi del-Toro; Marine Dumousseau; Sandra Orchard; Rafael C Jimenez; Eugenia Galeota; Guillaume Launay; Johannes Goll; Karin Breuer; Keiichiro Ono; Lukasz Salwinski; Henning Hermjakob
Journal:  Nucleic Acids Res       Date:  2013-05-13       Impact factor: 16.971

  8 in total

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