Literature DB >> 18629057

Interoperability of CABRI Services and Biochemical Pathways Databases.

Paolo Romano1, Ottavia Aresu, Maria Assunta Manniello, Barbara Parodi.   

Abstract

Common Access to Biological Resources and Information (CABRI) service is a 'one-stop-shop' for materials that are collected by a number of European culture collections that engage themselves in a quality service for the scientific community by adhering to Quality Guidelines for the management of resources and related information. It includes collections' catalogues that can be searched in an SRS implementation. A simple search facility, including a synonym search and a shopping cart, is also available. Within the European Biological Resource Centres Network (EBRCN) project, an extension and improvement of the catalogues' information is under way. This includes adding links to bibliographic databanks and sequence databases. Revision of 'in-house' controlled vocabularies used by data annotators is under way, in order to improve the setting up of external links, and new links to biochemical pathways databases are being set up for some of the catalogues.

Entities:  

Year:  2004        PMID: 18629057      PMCID: PMC2447341          DOI: 10.1002/cfg.376

Source DB:  PubMed          Journal:  Comp Funct Genomics        ISSN: 1531-6912


  6 in total

1.  The TRANSPATH signal transduction database: a knowledge base on signal transduction networks.

Authors:  F Schacherer; C Choi; U Götze; M Krull; S Pistor; E Wingender
Journal:  Bioinformatics       Date:  2001-11       Impact factor: 6.937

2.  BRENDA, enzyme data and metabolic information.

Authors:  Ida Schomburg; Antje Chang; Dietmar Schomburg
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

3.  The EBI SRS server-new features.

Authors:  Evgeny M Zdobnov; Rodrigo Lopez; Rolf Apweiler; Thure Etzold
Journal:  Bioinformatics       Date:  2002-08       Impact factor: 6.937

4.  SRS: information retrieval system for molecular biology data banks.

Authors:  T Etzold; A Ulyanov; P Argos
Journal:  Methods Enzymol       Date:  1996       Impact factor: 1.600

5.  The ENZYME data bank.

Authors:  A Bairoch
Journal:  Nucleic Acids Res       Date:  1993-07-01       Impact factor: 16.971

6.  TRANSFAC: transcriptional regulation, from patterns to profiles.

Authors:  V Matys; E Fricke; R Geffers; E Gössling; M Haubrock; R Hehl; K Hornischer; D Karas; A E Kel; O V Kel-Margoulis; D-U Kloos; S Land; B Lewicki-Potapov; H Michael; R Münch; I Reuter; S Rotert; H Saxel; M Scheer; S Thiele; E Wingender
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

  6 in total
  2 in total

1.  MetaBase--the wiki-database of biological databases.

Authors:  Dan M Bolser; Pierre-Yves Chibon; Nicolas Palopoli; Sungsam Gong; Daniel Jacob; Victoria Dominguez Del Angel; Dan Swan; Sebastian Bassi; Virginia González; Prashanth Suravajhala; Seungwoo Hwang; Paolo Romano; Rob Edwards; Bryan Bishop; John Eargle; Timur Shtatland; Nicholas J Provart; Dave Clements; Daniel P Renfro; Daeui Bhak; Jong Bhak
Journal:  Nucleic Acids Res       Date:  2011-12-01       Impact factor: 16.971

2.  The ESF Programme on Functional Genomics Workshop on 'Data Integration in Functional Genomics: Application to Biological Pathways'.

Authors:  Pierre-Alain Binz; Henning Hermjakob; Paul van der Vet
Journal:  Comp Funct Genomics       Date:  2004
  2 in total

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