Literature DB >> 18629037

A formal language-based approach in biology.

Marian Gheorghe1, Victor Mitrana.   

Abstract

This paper presents an overview of computational biology approaches and surveys some of the natural computing models using, in both cases, a formal language-based approach.

Year:  2004        PMID: 18629037      PMCID: PMC2447320          DOI: 10.1002/cfg.364

Source DB:  PubMed          Journal:  Comp Funct Genomics        ISSN: 1531-6912


  15 in total

Review 1.  The language of genes.

Authors:  David B Searls
Journal:  Nature       Date:  2002-11-14       Impact factor: 49.962

2.  Grammatical model of the regulation of gene expression.

Authors:  J Collado-Vides
Journal:  Proc Natl Acad Sci U S A       Date:  1992-10-15       Impact factor: 11.205

3.  Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid.

Authors:  J D WATSON; F H CRICK
Journal:  Nature       Date:  1953-04-25       Impact factor: 49.962

4.  On some operations suggested by genome evolution.

Authors:  J Dassow; V Mitrana
Journal:  Pac Symp Biocomput       Date:  1997

5.  Context-free evolutionary grammars and the structural language of nucleic acids.

Authors:  J Dassow; V Mitrana; A Salomaa
Journal:  Biosystems       Date:  1997       Impact factor: 1.973

6.  Linguistics of nucleotide sequences. I: The significance of deviations from mean statistical characteristics and prediction of the frequencies of occurrence of words.

Authors:  P A Pevzner; A A Mironov
Journal:  J Biomol Struct Dyn       Date:  1989-04

7.  Linguistics of nucleotide sequences: morphology and comparison of vocabularies.

Authors:  V Brendel; J S Beckmann; E N Trifonov
Journal:  J Biomol Struct Dyn       Date:  1986-08

8.  Mathematical models for cellular interactions in development. I. Filaments with one-sided inputs.

Authors:  A Lindenmayer
Journal:  J Theor Biol       Date:  1968-03       Impact factor: 2.691

9.  Formal language theory and DNA: an analysis of the generative capacity of specific recombinant behaviors.

Authors:  T Head
Journal:  Bull Math Biol       Date:  1987       Impact factor: 1.758

10.  A transformational-grammar approach to the study of the regulation of gene expression.

Authors:  J Collado-Vides
Journal:  J Theor Biol       Date:  1989-02-22       Impact factor: 2.691

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  3 in total

1.  Data Compression Concepts and Algorithms and their Applications to Bioinformatics.

Authors:  O U Nalbantog̃lu; D J Russell; K Sayood
Journal:  Entropy (Basel)       Date:  2010-01-01       Impact factor: 2.524

Review 2.  A review of feature extraction software for microarray gene expression data.

Authors:  Ching Siang Tan; Wai Soon Ting; Mohd Saberi Mohamad; Weng Howe Chan; Safaai Deris; Zuraini Ali Shah
Journal:  Biomed Res Int       Date:  2014-08-31       Impact factor: 3.411

3.  Hemoglobin state-flux: A finite-state model representation of the hemoglobin signal for evaluation of the resting state and the influence of disease.

Authors:  Randall L Barbour; Harry L Graber; San-Lian S Barbour
Journal:  PLoS One       Date:  2018-06-08       Impact factor: 3.240

  3 in total

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