Literature DB >> 18628917

Genome-wide generation of yeast gene deletion strains.

D E Kelly1, D C Lamb, S L Kelly.   

Abstract

In the year 2001 a collection of yeast strains will be completed that are deleted in the 6000 open reading frames selected as putative genes by the initial bioinformatic analysis of the Saccharomyces cerevisiae genome. The collection was produced by the transatlantic yeast gene deletion project, a collaboration involving researchers in the USA, Canada and Europe. The European effort was part of EUROFAN (European Functional Analysis Network) where some of the strains could feed into various functional analysis nodes dealing with specific areas of cell biology. With approximately 40% of human genes involved in heritable disease having a homologue in yeast and with the use of yeast in various drug discovery strategies, not least due to the dramatic increase in fungal infections, these strains will be valuable in trans-genomic studies and in specialised interest studies in individual laboratories. A detailed analysis of the project by the consortium is in preparation, here we discuss the yeast strains, reported findings and approaches to using this resource.

Entities:  

Year:  2001        PMID: 18628917      PMCID: PMC2447215          DOI: 10.1002/cfg.95

Source DB:  PubMed          Journal:  Comp Funct Genomics        ISSN: 1531-6912


  14 in total

1.  Widespread aneuploidy revealed by DNA microarray expression profiling.

Authors:  T R Hughes; C J Roberts; H Dai; A R Jones; M R Meyer; D Slade; J Burchard; S Dow; T R Ward; M J Kidd; S H Friend; M J Marton
Journal:  Nat Genet       Date:  2000-07       Impact factor: 38.330

2.  Functional discovery via a compendium of expression profiles.

Authors:  T R Hughes; M J Marton; A R Jones; C J Roberts; R Stoughton; C D Armour; H A Bennett; E Coffey; H Dai; Y D He; M J Kidd; A M King; M R Meyer; D Slade; P Y Lum; S B Stepaniants; D D Shoemaker; D Gachotte; K Chakraburtty; J Simon; M Bard; S H Friend
Journal:  Cell       Date:  2000-07-07       Impact factor: 41.582

3.  Systematic analysis of S. cerevisiae chromosome VIII genes.

Authors:  R Niedenthal; L Riles; U Güldener; S Klein; M Johnston; J H Hegemann
Journal:  Yeast       Date:  1999-12       Impact factor: 3.239

4.  Histidine77, glutamic acid81, glutamic acid123, threonine126, asparagine194, and tryptophan197 of the human emopamil binding protein are required for in vivo sterol delta 8-delta 7 isomerization.

Authors:  F F Moebius; K E Soellner; B Fiechtner; C W Huck; G Bonn; H Glossmann
Journal:  Biochemistry       Date:  1999-01-19       Impact factor: 3.162

5.  Genomic profiling of drug sensitivities via induced haploinsufficiency.

Authors:  G Giaever; D D Shoemaker; T W Jones; H Liang; E A Winzeler; A Astromoff; R W Davis
Journal:  Nat Genet       Date:  1999-03       Impact factor: 38.330

6.  Molecular aspects of azole antifungal action and resistance.

Authors:  David Lamb; Diane Kelly; Steven Kelly
Journal:  Drug Resist Updat       Date:  1999-12       Impact factor: 18.500

Review 7.  Life with 6000 genes.

Authors:  A Goffeau; B G Barrell; H Bussey; R W Davis; B Dujon; H Feldmann; F Galibert; J D Hoheisel; C Jacq; M Johnston; E J Louis; H W Mewes; Y Murakami; P Philippsen; H Tettelin; S G Oliver
Journal:  Science       Date:  1996-10-25       Impact factor: 47.728

8.  New heterologous modules for classical or PCR-based gene disruptions in Saccharomyces cerevisiae.

Authors:  A Wach; A Brachat; R Pöhlmann; P Philippsen
Journal:  Yeast       Date:  1994-12       Impact factor: 3.239

9.  A genomic approach for the identification and classification of genes involved in cell wall formation and its regulation in Saccharomyces cerevisiae.

Authors:  P W de Groot; C Ruiz; C R Vázquez de Aldana; E Duenas; V J Cid; F Del Rey; J M Rodríquez-Peña; P Pérez; A Andel; J Caubín; J Arroyo; J C García; C Gil; M Molina; L J García; C Nombela; F M Klis
Journal:  Comp Funct Genomics       Date:  2001

10.  A re-annotation of the Saccharomyces cerevisiae genome.

Authors:  V Wood; K M Rutherford; A Ivens; M A Rajandream; B Barrell
Journal:  Comp Funct Genomics       Date:  2001
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  17 in total

1.  Loss of dispensable genes is not adaptive in yeast.

Authors:  Piotr Sliwa; Ryszard Korona
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-28       Impact factor: 11.205

2.  Genetic and biochemical analysis of the SLN1 pathway in Saccharomyces cerevisiae.

Authors:  Jan S Fassler; Ann H West
Journal:  Methods Enzymol       Date:  2010-03-01       Impact factor: 1.600

3.  Adaptation of Saccharomyces cerevisiae to the herbicide 2,4-dichlorophenoxyacetic acid, mediated by Msn2p- and Msn4p-regulated genes: important role of SPI1.

Authors:  T Simões; M C Teixeira; A R Fernandes; Isabel Sá-Correia
Journal:  Appl Environ Microbiol       Date:  2003-07       Impact factor: 4.792

4.  Cellular pathways for DNA repair and damage tolerance of formaldehyde-induced DNA-protein crosslinks.

Authors:  Bendert de Graaf; Adam Clore; Amanda K McCullough
Journal:  DNA Repair (Amst)       Date:  2009-07-21

5.  Sterol side chain reductase 2 is a key enzyme in the biosynthesis of cholesterol, the common precursor of toxic steroidal glycoalkaloids in potato.

Authors:  Satoru Sawai; Kiyoshi Ohyama; Shuhei Yasumoto; Hikaru Seki; Tetsushi Sakuma; Takashi Yamamoto; Yumiko Takebayashi; Mikiko Kojima; Hitoshi Sakakibara; Toshio Aoki; Toshiya Muranaka; Kazuki Saito; Naoyuki Umemoto
Journal:  Plant Cell       Date:  2014-09-12       Impact factor: 11.277

6.  The modest beginnings of one genome project.

Authors:  David B Kaback
Journal:  Genetics       Date:  2013-06       Impact factor: 4.562

7.  Specialized sugar sensing in diverse fungi.

Authors:  Victoria Brown; Jeffrey Sabina; Mark Johnston
Journal:  Curr Biol       Date:  2009-02-26       Impact factor: 10.834

8.  Saturation of the human phenome.

Authors:  Mark E Samuels
Journal:  Curr Genomics       Date:  2010-11       Impact factor: 2.236

9.  Sulfolobus mutants, generated via PCR products, which lack putative enzymes of UV photoproduct repair.

Authors:  Cynthia J Sakofsky; Laura A Runck; Dennis W Grogan
Journal:  Archaea       Date:  2011-07-07       Impact factor: 3.273

10.  The biology of thermoacidophilic archaea from the order Sulfolobales.

Authors:  April M Lewis; Alejandra Recalde; Christopher Bräsen; James A Counts; Phillip Nussbaum; Jan Bost; Larissa Schocke; Lu Shen; Daniel J Willard; Tessa E F Quax; Eveline Peeters; Bettina Siebers; Sonja-Verena Albers; Robert M Kelly
Journal:  FEMS Microbiol Rev       Date:  2021-08-17       Impact factor: 16.408

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