Literature DB >> 18627132

Kinetic analyses of retaining endo-(xylo)glucanases from plant and microbial sources using new chromogenic xylogluco-oligosaccharide aryl glycosides.

Farid M Ibatullin1, Martin J Baumann, Lionel Greffe, Harry Brumer.   

Abstract

A library of phenyl beta-glycosides of xylogluco-oligosaccharides was synthesized via a chemoenzymatic approach to produce new, specific substrates for xyloglucanases. Tamarind xyloglucan was completely hydrolyzed to four, variably galactosylated component oligosaccharides based on Glc 4 backbones, using a Trichoderma endo-glucanase mixture. Oligosaccharide complexity could be further reduced by beta-galactosidase treament. Subsequent per- O-acetylation, alpha-bromination, phase-transfer glycosylation, and Zemplen deprotection yielded phenyl glycosides of XXXG and XLLG oligosaccharides with a broad range of aglycon p K a values. Kinetic and product analysis of the action of the archetypal plant endo-xyloglucanase, Tropaeolum majus NXG1, on these compounds indicated that formation of the glycosyl-enzyme intermediate was rate-limiting in the case of phenol leaving groups with p K a values of >7, leading exclusively to substrate hydrolysis. Conversely, substrates with aglycon p K a values of 5.4 gave rise to a significant amount of transglycosylation products, indicating a change in the relative rates of formation and breakdown of the glycosyl-enzyme intermediate for these faster substrates. Notably, comparison of the initial rates of XXXG-Ar and XLLG-Ar conversion indicated that catalysis by TmNXG1 was essentially insensitive to the presence of galactose in the negative subsites for all leaving groups. More broadly, analysis of a selection of enzymes from CAZy families GH 5, 12, and 16 indicated that the phenyl glycosides are substrates for anomeric configuration-retaining endo-xyloglucanases but are not substrates for strict xyloglucan endo-transglycosylases (XETs). The relative activities of the GH 5, 12, and 16 endo-xyloglucanases toward GGGG-CNP, XXXG-CNP, and XLLG-CNP reflected those observed using analogous high molar mass polysaccharides. These new chromogenic substrates may thus find wide application in the discovery, screening, and detailed kinetic analysis of new xyloglucan-active enzymes.

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Year:  2008        PMID: 18627132     DOI: 10.1021/bi8009168

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  12 in total

1.  The XTH gene family: an update on enzyme structure, function, and phylogeny in xyloglucan remodeling.

Authors:  Jens M Eklöf; Harry Brumer
Journal:  Plant Physiol       Date:  2010-04-26       Impact factor: 8.340

2.  Crystallographic insight into the evolutionary origins of xyloglucan endotransglycosylases and endohydrolases.

Authors:  Nicholas McGregor; Victor Yin; Ching-Chieh Tung; Filip Van Petegem; Harry Brumer
Journal:  Plant J       Date:  2017-02-11       Impact factor: 6.417

3.  Structure and activity of Paenibacillus polymyxa xyloglucanase from glycoside hydrolase family 44.

Authors:  Antonio Ariza; Jens M Eklöf; Oliver Spadiut; Wendy A Offen; Shirley M Roberts; Werner Besenmatter; Esben P Friis; Michael Skjøt; Keith S Wilson; Harry Brumer; Gideon Davies
Journal:  J Biol Chem       Date:  2011-07-27       Impact factor: 5.157

4.  A real-time fluorogenic assay for the visualization of glycoside hydrolase activity in planta.

Authors:  Farid M Ibatullin; Alicja Banasiak; Martin J Baumann; Lionel Greffe; Junko Takahashi; Ewa J Mellerowicz; Harry Brumer
Journal:  Plant Physiol       Date:  2009-09-25       Impact factor: 8.340

5.  Group III-A XTH genes of Arabidopsis encode predominant xyloglucan endohydrolases that are dispensable for normal growth.

Authors:  Nomchit Kaewthai; Delphine Gendre; Jens M Eklöf; Farid M Ibatullin; Ines Ezcurra; Rishikesh P Bhalerao; Harry Brumer
Journal:  Plant Physiol       Date:  2012-10-25       Impact factor: 8.340

6.  Comprehensive functional characterization of the glycoside hydrolase family 3 enzymes from Cellvibrio japonicus reveals unique metabolic roles in biomass saccharification.

Authors:  Cassandra E Nelson; Mohamed A Attia; Artur Rogowski; Carl Morland; Harry Brumer; Jeffrey G Gardner
Journal:  Environ Microbiol       Date:  2017-12-07       Impact factor: 5.491

7.  Structure-Function Analysis of a Mixed-linkage β-Glucanase/Xyloglucanase from the Key Ruminal Bacteroidetes Prevotella bryantii B(1)4.

Authors:  Nicholas McGregor; Mariya Morar; Thomas Hauch Fenger; Peter Stogios; Nicolas Lenfant; Victor Yin; Xiaohui Xu; Elena Evdokimova; Hong Cui; Bernard Henrissat; Alexei Savchenko; Harry Brumer
Journal:  J Biol Chem       Date:  2015-10-27       Impact factor: 5.157

8.  Building custom polysaccharides in vitro with an efficient, broad-specificity xyloglucan glycosynthase and a fucosyltransferase.

Authors:  Oliver Spadiut; Farid M Ibatullin; Jonelle Peart; Fredrika Gullfot; Carlos Martinez-Fleites; Marcus Ruda; Chunlin Xu; Gustav Sundqvist; Gideon J Davies; Harry Brumer
Journal:  J Am Chem Soc       Date:  2011-06-27       Impact factor: 15.419

9.  A discrete genetic locus confers xyloglucan metabolism in select human gut Bacteroidetes.

Authors:  Johan Larsbrink; Theresa E Rogers; Glyn R Hemsworth; Lauren S McKee; Alexandra S Tauzin; Oliver Spadiut; Stefan Klinter; Nicholas A Pudlo; Karthik Urs; Nicole M Koropatkin; A Louise Creagh; Charles A Haynes; Amelia G Kelly; Stefan Nilsson Cederholm; Gideon J Davies; Eric C Martens; Harry Brumer
Journal:  Nature       Date:  2014-01-19       Impact factor: 49.962

10.  A complex gene locus enables xyloglucan utilization in the model saprophyte Cellvibrio japonicus.

Authors:  Johan Larsbrink; Andrew J Thompson; Magnus Lundqvist; Jeffrey G Gardner; Gideon J Davies; Harry Brumer
Journal:  Mol Microbiol       Date:  2014-09-17       Impact factor: 3.501

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