Literature DB >> 18620054

Sloppiness, robustness, and evolvability in systems biology.

Bryan C Daniels1, Yan-Jiun Chen, James P Sethna, Ryan N Gutenkunst, Christopher R Myers.   

Abstract

The functioning of many biochemical networks is often robust-remarkably stable under changes in external conditions and internal reaction parameters. Much recent work on robustness and evolvability has focused on the structure of neutral spaces, in which system behavior remains invariant to mutations. Recently we have shown that the collective behavior of multiparameter models is most often sloppy: insensitive to changes except along a few 'stiff' combinations of parameters, with an enormous sloppy neutral subspace. Robustness is often assumed to be an emergent evolved property, but the sloppiness natural to biochemical networks offers an alternative nonadaptive explanation. Conversely, ideas developed to study evolvability in robust systems can be usefully extended to characterize sloppy systems.

Mesh:

Year:  2008        PMID: 18620054     DOI: 10.1016/j.copbio.2008.06.008

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  57 in total

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3.  Sensitivity, robustness, and identifiability in stochastic chemical kinetics models.

Authors:  Michał Komorowski; Maria J Costa; David A Rand; Michael P H Stumpf
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5.  Temperature compensation and temperature sensation in the circadian clock.

Authors:  Philip B Kidd; Michael W Young; Eric D Siggia
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-02       Impact factor: 11.205

6.  'Glocal' robustness analysis and model discrimination for circadian oscillators.

Authors:  Marc Hafner; Heinz Koeppl; Martin Hasler; Andreas Wagner
Journal:  PLoS Comput Biol       Date:  2009-10-16       Impact factor: 4.475

7.  When the optimal is not the best: parameter estimation in complex biological models.

Authors:  Diego Fernández Slezak; Cecilia Suárez; Guillermo A Cecchi; Guillermo Marshall; Gustavo Stolovitzky
Journal:  PLoS One       Date:  2010-10-25       Impact factor: 3.240

8.  Estimating parameters for generalized mass action models with connectivity information.

Authors:  Chih-Lung Ko; Eberhard O Voit; Feng-Sheng Wang
Journal:  BMC Bioinformatics       Date:  2009-05-11       Impact factor: 3.169

9.  Identification of neutral biochemical network models from time series data.

Authors:  Marco Vilela; Susana Vinga; Marco A Grivet Mattoso Maia; Eberhard O Voit; Jonas S Almeida
Journal:  BMC Syst Biol       Date:  2009-05-05

10.  Iron behaving badly: inappropriate iron chelation as a major contributor to the aetiology of vascular and other progressive inflammatory and degenerative diseases.

Authors:  Douglas B Kell
Journal:  BMC Med Genomics       Date:  2009-01-08       Impact factor: 3.063

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