Literature DB >> 18617392

Root layers: complex regulation of developmental patterning.

Jalean J Petricka1, Philip N Benfey.   

Abstract

Developmental patterning events involve cell fate specification and maintenance processes in diverse, multicellular organisms. The simple arrangement of tissue layers in the Arabidopsis thaliana root provides a highly tractable system for the study of these processes. This review highlights recent work addressing the patterning of root tissues focusing on the factors involved and their complex regulation. In the past two years studies of root patterning have indicated that chromatin remodeling, protein movement, transcriptional networks, and an auxin gradient, all contribute to the complexity inherent in developmental patterning events within the root. As a result, future research advances in this field will require tissue-specific information at both the single gene and global level.

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Mesh:

Year:  2008        PMID: 18617392      PMCID: PMC2605625          DOI: 10.1016/j.gde.2008.05.001

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  48 in total

1.  The PIN auxin efflux facilitator network controls growth and patterning in Arabidopsis roots.

Authors:  Ikram Blilou; Jian Xu; Marjolein Wildwater; Viola Willemsen; Ivan Paponov; Jirí Friml; Renze Heidstra; Mitsuhiro Aida; Klaus Palme; Ben Scheres
Journal:  Nature       Date:  2005-01-06       Impact factor: 49.962

Review 2.  A genetic regulatory network in the development of trichomes and root hairs.

Authors:  Tetsuya Ishida; Tetsuya Kurata; Kiyotaka Okada; Takuji Wada
Journal:  Annu Rev Plant Biol       Date:  2008       Impact factor: 26.379

3.  Intercellular movement of the putative transcription factor SHR in root patterning.

Authors:  K Nakajima; G Sena; T Nawy; P N Benfey
Journal:  Nature       Date:  2001-09-20       Impact factor: 49.962

Review 4.  Auxin transport.

Authors:  Joshua J Blakeslee; Wendy A Peer; Angus S Murphy
Journal:  Curr Opin Plant Biol       Date:  2005-10       Impact factor: 7.834

5.  The SCARECROW gene regulates an asymmetric cell division that is essential for generating the radial organization of the Arabidopsis root.

Authors:  L Di Laurenzio; J Wysocka-Diller; J E Malamy; L Pysh; Y Helariutta; G Freshour; M G Hahn; K A Feldmann; P N Benfey
Journal:  Cell       Date:  1996-08-09       Impact factor: 41.582

6.  Mosaic analyses using marked activation and deletion clones dissect Arabidopsis SCARECROW action in asymmetric cell division.

Authors:  Renze Heidstra; David Welch; Ben Scheres
Journal:  Genes Dev       Date:  2004-08-15       Impact factor: 11.361

7.  A broad competence to respond to SHORT ROOT revealed by tissue-specific ectopic expression.

Authors:  Giovanni Sena; Jee W Jung; Philip N Benfey
Journal:  Development       Date:  2004-05-13       Impact factor: 6.868

8.  The PLETHORA genes mediate patterning of the Arabidopsis root stem cell niche.

Authors:  Mitsuhiro Aida; Dimitris Beis; Renze Heidstra; Viola Willemsen; Ikram Blilou; Carla Galinha; Laurent Nussaume; Yoo-Sun Noh; Richard Amasino; Ben Scheres
Journal:  Cell       Date:  2004-10-01       Impact factor: 41.582

9.  Natural genetic variation in Arabidopsis identifies BREVIS RADIX, a novel regulator of cell proliferation and elongation in the root.

Authors:  Céline F Mouchel; Georgette C Briggs; Christian S Hardtke
Journal:  Genes Dev       Date:  2004-03-18       Impact factor: 11.361

10.  Root development in Arabidopsis: four mutants with dramatically altered root morphogenesis.

Authors:  P N Benfey; P J Linstead; K Roberts; J W Schiefelbein; M T Hauser; R A Aeschbacher
Journal:  Development       Date:  1993-09       Impact factor: 6.868

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  23 in total

1.  Brassinosteroid perception in the epidermis controls root meristem size.

Authors:  Yael Hacham; Neta Holland; Cristina Butterfield; Susana Ubeda-Tomas; Malcolm J Bennett; Joanne Chory; Sigal Savaldi-Goldstein
Journal:  Development       Date:  2011-01-26       Impact factor: 6.868

2.  miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth.

Authors:  Elena Marin; Virginie Jouannet; Aurélie Herz; Annemarie S Lokerse; Dolf Weijers; Herve Vaucheret; Laurent Nussaume; Martin D Crespi; Alexis Maizel
Journal:  Plant Cell       Date:  2010-04-02       Impact factor: 11.277

3.  A characterization of grapevine of GRAS domain transcription factor gene family.

Authors:  Xin Sun; Zhengqiang Xie; Cheng Zhang; Qian Mu; Weimin Wu; Baoju Wang; Jinggui Fang
Journal:  Funct Integr Genomics       Date:  2016-02-03       Impact factor: 3.410

4.  Arabidopsis Tyrosylprotein sulfotransferase acts in the auxin/PLETHORA pathway in regulating postembryonic maintenance of the root stem cell niche.

Authors:  Wenkun Zhou; Lirong Wei; Jian Xu; Qingzhe Zhai; Hongling Jiang; Rong Chen; Qian Chen; Jiaqiang Sun; Jinfang Chu; Lihuang Zhu; Chun-Ming Liu; Chuanyou Li
Journal:  Plant Cell       Date:  2010-11-02       Impact factor: 11.277

Review 5.  Update on lupin cluster roots. Update on white lupin cluster root acclimation to phosphorus deficiency.

Authors:  Lingyun Cheng; Bruna Bucciarelli; Jianbo Shen; Deborah Allan; Carroll P Vance
Journal:  Plant Physiol       Date:  2011-04-04       Impact factor: 8.340

Review 6.  MicroRNAs as regulators of root development and architecture.

Authors:  Ghazanfar A Khan; Marie Declerck; Céline Sorin; Caroline Hartmann; Martin Crespi; Christine Lelandais-Brière
Journal:  Plant Mol Biol       Date:  2011-05-24       Impact factor: 4.076

7.  The Arabidopsis SWI2/SNF2 Chromatin Remodeling ATPase BRAHMA Targets Directly to PINs and Is Required for Root Stem Cell Niche Maintenance.

Authors:  Songguang Yang; Chenlong Li; Linmao Zhao; Sujuan Gao; Jingxia Lu; Minglei Zhao; Chia-Yang Chen; Xuncheng Liu; Ming Luo; Yuhai Cui; Chengwei Yang; Keqiang Wu
Journal:  Plant Cell       Date:  2015-05-19       Impact factor: 11.277

8.  Cell-Fate Specification in Arabidopsis Roots Requires Coordinative Action of Lineage Instruction and Positional Reprogramming.

Authors:  Qiaozhi Yu; Pengxue Li; Nengsong Liang; Hong Wang; Meizhi Xu; Shuang Wu
Journal:  Plant Physiol       Date:  2017-08-18       Impact factor: 8.340

9.  STIMPY mediates cytokinin signaling during shoot meristem establishment in Arabidopsis seedlings.

Authors:  Anna Skylar; Fangxin Hong; Joanne Chory; Detlef Weigel; Xuelin Wu
Journal:  Development       Date:  2010-02       Impact factor: 6.868

10.  IAA-Ala Resistant3, an evolutionarily conserved target of miR167, mediates Arabidopsis root architecture changes during high osmotic stress.

Authors:  Natsuko Kinoshita; Huan Wang; Hiroyuki Kasahara; Jun Liu; Cameron Macpherson; Yasunori Machida; Yuji Kamiya; Matthew A Hannah; Nam-Hai Chua
Journal:  Plant Cell       Date:  2012-09-07       Impact factor: 11.277

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