Literature DB >> 18610957

Hydrogen bond breaking mechanism and water reorientational dynamics in the hydration layer of lysozyme.

Biman Jana1, Subrata Pal, Biman Bagchi.   

Abstract

The mechanism and the rate of hydrogen bond-breaking in the hydration layer surrounding an aqueous protein are important ingredients required to understand the various aspects of protein dynamics, its function, and stability. Here, we use computer simulation and a time correlation function technique to understand these aspects in the hydration layer of lysozyme. Water molecules in the layer are found to exhibit three distinct bond-breaking mechanisms. A large angle orientational jump of the donor water molecule is common among all of them. In the most common ( approximately 80%) bond-breaking event in the layer, the new acceptor water molecule comes from the first coordination shell (initially within 3.5 A of the donor), and the old acceptor water molecule remains within the first coordination shell, even after the bond-breaking. This is in contrast to that in bulk water, in which both of the acceptor molecules involve the second coordination shell. Additionally, the motion of the incoming and the outgoing acceptor molecules involved is not diffusive in the hydration layer, in contrast to their observed diffusive motion in the bulk. The difference in rotational dynamics between the bulk and the hydration layer water molecules is clearly manifested in the calculated time-dependent angular van Hove self-correlation function ( G(theta, t)) which has a pronounced two-peak structure in the layer, and this can be traced to the constrained translational motion in the layer. The longevity of the surrounding hydrogen bond network is found to be significantly enhanced near a hydrophilic residue.

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Year:  2008        PMID: 18610957     DOI: 10.1021/jp800998w

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  8 in total

1.  Hydrogen Bond Network of Water around Protein Investigated with Terahertz and Infrared Spectroscopy.

Authors:  Keiichiro Shiraga; Yuichi Ogawa; Naoshi Kondo
Journal:  Biophys J       Date:  2016-12-20       Impact factor: 4.033

2.  Hydration water mobility is enhanced around tau amyloid fibers.

Authors:  Yann Fichou; Giorgio Schirò; François-Xavier Gallat; Cedric Laguri; Martine Moulin; Jérôme Combet; Michaela Zamponi; Michael Härtlein; Catherine Picart; Estelle Mossou; Hugues Lortat-Jacob; Jacques-Philippe Colletier; Douglas J Tobias; Martin Weik
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-27       Impact factor: 11.205

3.  Water dynamics at neutral and ionic interfaces.

Authors:  Emily E Fenn; Daryl B Wong; M D Fayer
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-25       Impact factor: 11.205

4.  Water dynamics and interactions in water-polyether binary mixtures.

Authors:  Emily E Fenn; David E Moilanen; Nancy E Levinger; Michael D Fayer
Journal:  J Am Chem Soc       Date:  2009-04-22       Impact factor: 15.419

5.  Water dynamics at the interface in AOT reverse micelles.

Authors:  David E Moilanen; Emily E Fenn; Daryl Wong; M D Fayer
Journal:  J Phys Chem B       Date:  2009-06-25       Impact factor: 2.991

6.  Water dynamics in large and small reverse micelles: from two ensembles to collective behavior.

Authors:  David E Moilanen; Emily E Fenn; Daryl Wong; Michael D Fayer
Journal:  J Chem Phys       Date:  2009-07-07       Impact factor: 3.488

Review 7.  Water Dynamics in the Hydration Shells of Biomolecules.

Authors:  Damien Laage; Thomas Elsaesser; James T Hynes
Journal:  Chem Rev       Date:  2017-03-01       Impact factor: 60.622

8.  Insignificant Effect of Temperature on the Structure and Angular Jumps of Water near a Hydrophobic Cation.

Authors:  Adyasa Priyadarsini; Bhabani S Mallik
Journal:  ACS Omega       Date:  2021-03-19
  8 in total

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