Literature DB >> 18607096

Crystallization and crystallographic analysis of human NUDT16.

Jie Zhang1, Feng Gao, Qianmin Zhang, Qianying Chen, Jianxun Qi, Jinghua Yan.   

Abstract

Human NUDT16, a decapping enzyme belonging to the Nudix superfamily, plays a pivotal role in U8 snoRNA stability. Recombinant NUDT16 expressed in Escherichia coli was crystallized using the hanging-drop vapour-diffusion method. The crystals, which diffracted to 2.10 A resolution, belonged to space group P2(1)2(1)2(1), with unit-cell parameters a = 44.47, b = 79.32, c = 97.20 A. The Matthews coefficient and the solvent content were calculated to be 1.92 A(3) Da(-1) and 35.84%, respectively, for two molecules per asymmetric unit.

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Year:  2008        PMID: 18607096      PMCID: PMC2443980          DOI: 10.1107/S1744309108016928

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  13 in total

1.  Identification of a U8 snoRNA-specific binding protein.

Authors:  N Tomasevic; B Peculis
Journal:  J Biol Chem       Date:  1999-12-10       Impact factor: 5.157

2.  The structure of ADP-ribose pyrophosphatase reveals the structural basis for the versatility of the Nudix family.

Authors:  S B Gabelli; M A Bianchet; M J Bessman; L M Amzel
Journal:  Nat Struct Biol       Date:  2001-05

3.  Crystals of X29, a Xenopus laevis U8 snoRNA-binding protein with nuclear decapping activity.

Authors:  Brenda A Peculis; J Neel Scarsdale; H T Wright
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-08-26

4.  Xenopus U8 snoRNA binding protein is a conserved nuclear decapping enzyme.

Authors:  Trina Ghosh; Brian Peterson; Nenad Tomasevic; Brenda A Peculis
Journal:  Mol Cell       Date:  2004-03-26       Impact factor: 17.970

Review 5.  Structures and mechanisms of Nudix hydrolases.

Authors:  A S Mildvan; Z Xia; H F Azurmendi; V Saraswat; P M Legler; M A Massiah; S B Gabelli; M A Bianchet; L-W Kang; L M Amzel
Journal:  Arch Biochem Biophys       Date:  2005-01-01       Impact factor: 4.013

6.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

7.  Dual hydrolysis of diphosphate and triphosphate derivatives of oxidized deoxyadenosine by Orf17 (NtpA), a MutT-type enzyme.

Authors:  Mika Hori; Katsuyoshi Fujikawa; Hiroshi Kasai; Hideyoshi Harashima; Hiroyuki Kamiya
Journal:  DNA Repair (Amst)       Date:  2005-01-02

8.  Multiple enzyme activities of Escherichia coli MutT protein for sanitization of DNA and RNA precursor pools.

Authors:  Riyoko Ito; Hiroshi Hayakawa; Mutsuo Sekiguchi; Toru Ishibashi
Journal:  Biochemistry       Date:  2005-05-03       Impact factor: 3.162

9.  Metal determines efficiency and substrate specificity of the nuclear NUDIX decapping proteins X29 and H29K (Nudt16).

Authors:  Brenda A Peculis; Kristen Reynolds; Megan Cleland
Journal:  J Biol Chem       Date:  2007-06-13       Impact factor: 5.157

10.  Characterization of a nudix hydrolase from Deinococcus radiodurans with a marked specificity for (deoxy)ribonucleoside 5'-diphosphates.

Authors:  David I Fisher; Jared L Cartwright; Hideyoshi Harashima; Hiroyuki Kamiya; Alexander G McLennan
Journal:  BMC Biochem       Date:  2004-05-17       Impact factor: 4.059

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  1 in total

1.  hNUDT16: a universal decapping enzyme for small nucleolar RNA and cytoplasmic mRNA.

Authors:  Guangwen Lu; Jie Zhang; Yan Li; Zhixin Li; Na Zhang; Xiang Xu; Tingting Wang; Zhenhong Guan; George F Gao; Jinghua Yan
Journal:  Protein Cell       Date:  2011-02-20       Impact factor: 14.870

  1 in total

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