Literature DB >> 18602371

Reference gene selection for real-time RT-PCR in regenerating mouse livers.

Kohei Tatsumi1, Kazuo Ohashi, Sanae Taminishi, Teruo Okano, Akira Yoshioka, Midori Shima.   

Abstract

The liver has an intrinsic ability to undergo active proliferation and recover functional liver mass in response to an injury response. This regenerative process involves a complex yet well orchestrated change in the gene expression profile. To produce accurate and reliable gene expression of target genes during various stages of liver regeneration, the determination of internal control housekeeping genes (HKGs) those are uniformly expressed is required. In the present study, the gene expression of 8 commonly used HKGs, including GAPDH, ACTB, HPRT1, GUSB, PPIA, TBP, TFRC, and RPL4, were studied using mouse livers that were quiescent and actively regenerating induced by partial hepatectomy. The amplification of the HKGs was statistically analyzed by two different mathematical algorithms, geNorm and NormFinder. Using this method, PPIA and TBP gene expression found to be relatively stable regardless of the stages of liver regeneration and would be ideal for normalization to target gene expression.

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Year:  2008        PMID: 18602371     DOI: 10.1016/j.bbrc.2008.06.103

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN: 0006-291X            Impact factor:   3.575


  37 in total

1.  Reference gene selection for real-time RT-PCR in eight kinds of rat regenerating hepatic cells.

Authors:  Gai-Ping Wang; Cun-Shuan Xu
Journal:  Mol Biotechnol       Date:  2010-09       Impact factor: 2.695

2.  Quantification of gene expression after painful nerve injury: validation of optimal reference genes.

Authors:  Madhavi Latha Yadav Bangaru; Frank Park; Andy Hudmon; J Bruce McCallum; Quinn H Hogan
Journal:  J Mol Neurosci       Date:  2011-08-24       Impact factor: 3.444

3.  Effects on coagulation factor production following primary hepatomitogen-induced direct hyperplasia.

Authors:  Kohei Tatsumi; Kazuo Ohashi; Sanae Taminishi; Soichi Takagi; Rie Utoh; Akira Yoshioka; Midori Shima; Teruo Okano
Journal:  World J Gastroenterol       Date:  2009-11-14       Impact factor: 5.742

4.  Selection of housekeeping genes for use in quantitative reverse transcription PCR assays on the murine cornea.

Authors:  Shengwei Ren; Feng Zhang; Changyou Li; Changkai Jia; Siyuan Li; Haijie Xi; Hongbo Zhang; Lingling Yang; Yiqiang Wang
Journal:  Mol Vis       Date:  2010-06-11       Impact factor: 2.367

5.  Determination of reference genes for circadian studies in different tissues and mouse strains.

Authors:  Rok Kosir; Jure Acimovic; Marko Golicnik; Martina Perse; Gregor Majdic; Martina Fink; Damjana Rozman
Journal:  BMC Mol Biol       Date:  2010-08-16       Impact factor: 2.946

6.  Identification of cell-specific patterns of reference gene stability in quantitative reverse-transcriptase polymerase chain reaction studies of embryonic, placental and neural stem models of prenatal ethanol exposure.

Authors:  Mindy N Carnahan; Kylee J Veazey; Daria Muller; Joseph D Tingling; Rajesh C Miranda; Michael C Golding
Journal:  Alcohol       Date:  2013-01-11       Impact factor: 2.405

7.  Validation of endogenous reference genes for insecticide-induced and developmental expression profiling of Liposcelis bostsrychophila (Psocoptera: Liposcelididae).

Authors:  Hong-Bo Jiang; Yong-Hua Liu; Pei-An Tang; An-Wei Zhou; Jin-Jun Wang
Journal:  Mol Biol Rep       Date:  2010-02       Impact factor: 2.316

8.  Impact of gene variants on sex-specific regulation of human Scavenger receptor class B type 1 (SR-BI) expression in liver and association with lipid levels in a population-based study.

Authors:  Ornit Chiba-Falek; Marshall Nichols; Sunil Suchindran; John Guyton; Geoffrey S Ginsburg; Elizabeth Barrett-Connor; Jeanette J McCarthy
Journal:  BMC Med Genet       Date:  2010-01-19       Impact factor: 2.103

9.  Validation of internal reference genes for quantitative real-time PCR in a non-model organism, the yellow-necked mouse, Apodemus flavicollis.

Authors:  Jan Axtner; Simone Sommer
Journal:  BMC Res Notes       Date:  2009-12-23

10.  Quantitative TaqMan real-time PCR assays for gene expression normalisation in feline tissues.

Authors:  Yvonne Kessler; A Katrin Helfer-Hungerbuehler; Valentino Cattori; Marina L Meli; Bigna Zellweger; Pete Ossent; Barbara Riond; Claudia E Reusch; Hans Lutz; Regina Hofmann-Lehmann
Journal:  BMC Mol Biol       Date:  2009-12-11       Impact factor: 2.946

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