Literature DB >> 18602004

Peptide-mediated interactions in biological systems: new discoveries and applications.

Evangelia Petsalaki1, Robert B Russell.   

Abstract

Peptide-mediated interactions play very important roles in cellular processes. Recent years have seen much activity in the discovery of new bioactive peptides, and interactions mediated by protein-peptide binding events. At the same time, computational approaches continue to be developed that allow protein-peptide interactions to be discovered with great accuracy. There are also a growing number of chemicals that can target these interactions with various applications in disease. Both new discoveries and predictions suggest that these protein-peptide interactions play greater roles in cellular processes than previously thought. We propose that projects to uncover the protein-peptide repertoire used in Nature in a systematic way will have numerous applications in molecular biology and medicine.

Mesh:

Substances:

Year:  2008        PMID: 18602004     DOI: 10.1016/j.copbio.2008.06.004

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  71 in total

1.  Structure-based characterization of the binding of peptide to the human endophilin-1 Src homology 3 domain using position-dependent noncovalent potential analysis.

Authors:  Chunjiang Fu; Gang Wu; Fenglin Lv; Feifei Tian
Journal:  J Mol Model       Date:  2011-09-27       Impact factor: 1.810

2.  Characterization of PDZ domain-peptide interactions using an integrated protocol of QM/MM, PB/SA, and CFEA analyses.

Authors:  Feifei Tian; Yonggang Lv; Peng Zhou; Li Yang
Journal:  J Comput Aided Mol Des       Date:  2011-10-01       Impact factor: 3.686

3.  Detection of peptide-binding sites on protein surfaces: the first step toward the modeling and targeting of peptide-mediated interactions.

Authors:  Assaf Lavi; Chi Ho Ngan; Dana Movshovitz-Attias; Tanggis Bohnuud; Christine Yueh; Dmitri Beglov; Ora Schueler-Furman; Dima Kozakov
Journal:  Proteins       Date:  2013-10-17

4.  Modeling protein-peptide recognition based on classical quantitative structure-affinity relationship approach: implication for proteome-wide inference of peptide-mediated interactions.

Authors:  Yang Zhou; Zhong Ni; Keping Chen; Haijun Liu; Liang Chen; Chaoqun Lian; Lirong Yan
Journal:  Protein J       Date:  2013-10       Impact factor: 2.371

5.  Rational redesign of a cation···π···π stacking at cardiovascular Fbw7-Skp1 complex interface and its application for deriving self-inhibitory peptides to disrupt the complex interaction.

Authors:  Jing Zhou; Yao-Sheng Wang
Journal:  J Mol Model       Date:  2017-09-26       Impact factor: 1.810

6.  Epitope-specificity of recombinant antibodies reveals promiscuous peptide-binding properties.

Authors:  Niclas Olsson; Stefan Wallin; Peter James; Carl A K Borrebaeck; Christer Wingren
Journal:  Protein Sci       Date:  2012-10-25       Impact factor: 6.725

7.  PEP-SiteFinder: a tool for the blind identification of peptide binding sites on protein surfaces.

Authors:  Adrien Saladin; Julien Rey; Pierre Thévenet; Martin Zacharias; Gautier Moroy; Pierre Tufféry
Journal:  Nucleic Acids Res       Date:  2014-05-06       Impact factor: 16.971

8.  Novel peptide-mediated interactions derived from high-resolution 3-dimensional structures.

Authors:  Amelie Stein; Patrick Aloy
Journal:  PLoS Comput Biol       Date:  2010-05-20       Impact factor: 4.475

9.  A structure filter for the Eukaryotic Linear Motif Resource.

Authors:  Allegra Via; Cathryn M Gould; Christine Gemünd; Toby J Gibson; Manuela Helmer-Citterich
Journal:  BMC Bioinformatics       Date:  2009-10-24       Impact factor: 3.169

10.  PepX: a structural database of non-redundant protein-peptide complexes.

Authors:  Peter Vanhee; Joke Reumers; Francois Stricher; Lies Baeten; Luis Serrano; Joost Schymkowitz; Frederic Rousseau
Journal:  Nucleic Acids Res       Date:  2009-10-30       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.