Literature DB >> 18600632

Ancient fossil specimens of extinct species are genetically more distant to an outgroup than extant sister species are.

Shi Huang1.   

Abstract

There exists a remarkable correlation between genetic distance as measured by protein or DNA dissimilarity and time of species divergence as inferred from fossil records. This observation has provoked the molecular clock hypothesis. However, data inconsistent with the hypothesis have steadily accumulated in recent years from studies of extant organisms. Here the published DNA and protein sequences from ancient fossil specimens were examined to see if they would support the molecular clock hypothesis. The hypothesis predicts that ancient specimens cannot be genetically more distant to an outgroup than extant sister species are. Also, two distinct ancient specimens cannot be genetically more distant than their extant sister species are. The findings here do not conform to these predictions. Neanderthals are more distant to chimpanzees and gorillas than modern humans are. Dinosaurs are more distant to frogs than extant birds are. Mastodons are more distant to opossums than other placental mammals are. The genetic distance between dinosaurs and mastodons is greater than that between extant birds and mammals. Therefore, while the molecular clock hypothesis is consistent with some data from extant organisms, it has yet to find support from ancient fossils. Far more damaging to the hypothesis than data from extant organisms, which merely question the constancy of mutation rate, the study of ancient fossil organisms here challenges for the first time the fundamental premise of modern evolution theory that genetic distances had always increased with time in the past history of life on Earth.

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Year:  2008        PMID: 18600632      PMCID: PMC2649772     

Source DB:  PubMed          Journal:  Riv Biol        ISSN: 0035-6050


  21 in total

Review 1.  Molecular clock mirages.

Authors:  F J Ayala
Journal:  Bioessays       Date:  1999-01       Impact factor: 4.345

2.  PRIMARY STRUCTURE AND EVOLUTION OF CYTOCHROME C.

Authors:  E MARGOLIASH
Journal:  Proc Natl Acad Sci U S A       Date:  1963-10       Impact factor: 11.205

3.  Sequencing and analysis of Neanderthal genomic DNA.

Authors:  James P Noonan; Graham Coop; Sridhar Kudaravalli; Doug Smith; Johannes Krause; Joe Alessi; Feng Chen; Darren Platt; Svante Pääbo; Jonathan K Pritchard; Edward M Rubin
Journal:  Science       Date:  2006-11-17       Impact factor: 47.728

Review 4.  Molecular clocks: four decades of evolution.

Authors:  Sudhir Kumar
Journal:  Nat Rev Genet       Date:  2005-08       Impact factor: 53.242

Review 5.  Molecular clocks: when times are a-changin'.

Authors:  Simon Y W Ho; Greger Larson
Journal:  Trends Genet       Date:  2005-12-13       Impact factor: 11.639

6.  Dates from the molecular clock: how wrong can we be?

Authors:  Mário J F Pulquério; Richard A Nichols
Journal:  Trends Ecol Evol       Date:  2006-12-08       Impact factor: 17.712

7.  Revisiting Neandertal diversity with a 100,000 year old mtDNA sequence.

Authors:  Ludovic Orlando; Pierre Darlu; Michel Toussaint; Dominique Bonjean; Marcel Otte; Catherine Hänni
Journal:  Curr Biol       Date:  2006-06-06       Impact factor: 10.834

8.  Protein sequences from mastodon and Tyrannosaurus rex revealed by mass spectrometry.

Authors:  John M Asara; Mary H Schweitzer; Lisa M Freimark; Matthew Phillips; Lewis C Cantley
Journal:  Science       Date:  2007-04-13       Impact factor: 47.728

9.  Interpreting sequences from mastodon and T. rex.

Authors:  John M Asara; John S Garavelli; David A Slatter; Mary H Schweitzer; Lisa M Freimark; Matthew Phillips; Lewis C Cantley
Journal:  Science       Date:  2007-09-07       Impact factor: 47.728

10.  Analysis of one million base pairs of Neanderthal DNA.

Authors:  Richard E Green; Johannes Krause; Susan E Ptak; Adrian W Briggs; Michael T Ronan; Jan F Simons; Lei Du; Michael Egholm; Jonathan M Rothberg; Maja Paunovic; Svante Pääbo
Journal:  Nature       Date:  2006-11-16       Impact factor: 49.962

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  1 in total

1.  The Genetic Equidistance Result of Molecular Evolution is Independent of Mutation Rates.

Authors:  Shi Huang
Journal:  J Comput Sci Syst Biol       Date:  2008-12-26
  1 in total

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