Literature DB >> 10070256

Molecular clock mirages.

F J Ayala1.   

Abstract

The hypothesis of the molecular clock proposes that molecular evolution occurs at rates that persist through time and across lineages, for a given gene. The neutral theory of molecular evolution predicts that the clock will be a Poisson process, with equal mean and variance. Experimental data have shown that the variance is typically larger than the mean. Hypotheses have been advanced to account for the hypervariance of molecular evolution. Four recent papers show that none of the predictive hypotheses that have been proposed can be generally maintained. The conclusion is that molecular evolution is dependent on the fickle process of natural selection. But it is a time-dependent process, so that accumulation of empirical data often yields an approximate clock, as a consequence of the expected convergence of large numbers.

Mesh:

Year:  1999        PMID: 10070256     DOI: 10.1002/(SICI)1521-1878(199901)21:1<71::AID-BIES9>3.0.CO;2-B

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  22 in total

1.  A methodological bias toward overestimation of molecular evolutionary time scales.

Authors:  Francisco Rodriguez-Trelles; Rosa Tarrio; Francisco J Ayala
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-11       Impact factor: 11.205

Review 2.  Mutation and epigenetic molecular clocks in cancer.

Authors:  Darryl Shibata
Journal:  Carcinogenesis       Date:  2010-11-12       Impact factor: 4.944

3.  Rates and patterns of gene duplication and loss in the human genome.

Authors:  James A Cotton; Roderic D M Page
Journal:  Proc Biol Sci       Date:  2005-02-07       Impact factor: 5.349

4.  There is no universal molecular clock for invertebrates, but rate variation does not scale with body size.

Authors:  Jessica A Thomas; John J Welch; Megan Woolfit; Lindell Bromham
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-01       Impact factor: 11.205

Review 5.  Fundamental concepts in genetics: genetics and the understanding of selection.

Authors:  Laurence D Hurst
Journal:  Nat Rev Genet       Date:  2009-02       Impact factor: 53.242

6.  Performance of relaxed-clock methods in estimating evolutionary divergence times and their credibility intervals.

Authors:  Fabia U Battistuzzi; Alan Filipski; S Blair Hedges; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2010-01-21       Impact factor: 16.240

7.  Internal Disequilibria and Phenotypic Diversification during Replication of Hepatitis C Virus in a Noncoevolving Cellular Environment.

Authors:  Elena Moreno; Isabel Gallego; Josep Gregori; Adriana Lucía-Sanz; María Eugenia Soria; Victoria Castro; Nathan M Beach; Susanna Manrubia; Josep Quer; Juan Ignacio Esteban; Charles M Rice; Jordi Gómez; Pablo Gastaminza; Esteban Domingo; Celia Perales
Journal:  J Virol       Date:  2017-04-28       Impact factor: 5.103

8.  Erratic overdispersion of three molecular clocks: GPDH, SOD, and XDH.

Authors:  F Rodríguez-Trelles; R Tarrío; F J Ayala
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-11       Impact factor: 11.205

9.  Extra petals in the buttercup (Ranunculus repens) provide a quick method to estimate the age of meadows.

Authors:  John Warren
Journal:  Ann Bot       Date:  2009-06-02       Impact factor: 4.357

10.  Ancient fossil specimens of extinct species are genetically more distant to an outgroup than extant sister species are.

Authors:  Shi Huang
Journal:  Riv Biol       Date:  2008 Jan-Apr
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