Literature DB >> 18599267

BSMART: a Matlab/C toolbox for analysis of multichannel neural time series.

Jie Cui1, Lei Xu, Steven L Bressler, Mingzhou Ding, Hualou Liang.   

Abstract

We have developed a Matlab/C toolbox, Brain-SMART (System for Multivariate AutoRegressive Time series, or BSMART), for spectral analysis of continuous neural time series data recorded simultaneously from multiple sensors. Available functions include time series data importing/exporting, preprocessing (normalization and trend removal), AutoRegressive (AR) modeling (multivariate/bivariate model estimation and validation), spectral quantity estimation (auto power, coherence and Granger causality spectra), network analysis (including coherence and causality networks) and visualization (including data, power, coherence and causality views). The tools for investigating causal network structures in respect of frequency bands are unique functions provided by this toolbox. All functionality has been integrated into a simple and user-friendly graphical user interface (GUI) environment designed for easy accessibility. Although we have tested the toolbox only on Windows and Linux operating systems, BSMART itself is system independent. This toolbox is freely available (http://www.brain-smart.org) under the GNU public license for open source development.

Mesh:

Year:  2008        PMID: 18599267      PMCID: PMC2585694          DOI: 10.1016/j.neunet.2008.05.007

Source DB:  PubMed          Journal:  Neural Netw        ISSN: 0893-6080


  20 in total

1.  MEA-Tools: an open source toolbox for the analysis of multi-electrode data with MATLAB.

Authors:  U Egert; Th Knott; C Schwarz; M Nawrot; A Brandt; S Rotter; M Diesmann
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2.  Chronic, multisite, multielectrode recordings in macaque monkeys.

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Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-05       Impact factor: 11.205

3.  Beta oscillations in a large-scale sensorimotor cortical network: directional influences revealed by Granger causality.

Authors:  Andrea Brovelli; Mingzhou Ding; Anders Ledberg; Yonghong Chen; Richard Nakamura; Steven L Bressler
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-21       Impact factor: 11.205

Review 4.  Chronic multiunit recordings in behaving animals: advantages and limitations.

Authors:  Hans Supèr; Pieter R Roelfsema
Journal:  Prog Brain Res       Date:  2005       Impact factor: 2.453

5.  Granger causality and information flow in multivariate processes.

Authors:  Katarzyna J Blinowska; Rafał Kuś; Maciej Kamiński
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-11-22

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Journal:  Biol Cybern       Date:  1991       Impact factor: 2.086

7.  A general statistical framework for frequency-domain analysis of EEG topographic structure.

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Journal:  Comput Biomed Res       Date:  1997-04

8.  Episodic multiregional cortical coherence at multiple frequencies during visual task performance.

Authors:  S L Bressler; R Coppola; R Nakamura
Journal:  Nature       Date:  1993-11-11       Impact factor: 49.962

9.  Network analysis of cortical visual pathways mapped with PET.

Authors:  A R McIntosh; C L Grady; L G Ungerleider; J V Haxby; S I Rapoport; B Horwitz
Journal:  J Neurosci       Date:  1994-02       Impact factor: 6.167

10.  Determination of EEG activity propagation: pair-wise versus multichannel estimate.

Authors:  Rafal Kuś; Maciej Kamiński; Katarzyna J Blinowska
Journal:  IEEE Trans Biomed Eng       Date:  2004-09       Impact factor: 4.538

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  58 in total

1.  Causality analysis of neural connectivity: critical examination of existing methods and advances of new methods.

Authors:  Sanqing Hu; Guojun Dai; Gregory A Worrell; Qionghai Dai; Hualou Liang
Journal:  IEEE Trans Neural Netw       Date:  2011-04-19

2.  A neocortical delta rhythm facilitates reciprocal interlaminar interactions via nested theta rhythms.

Authors:  Lucy M Carracedo; Henrik Kjeldsen; Leonie Cunnington; Alastair Jenkins; Ian Schofield; Mark O Cunningham; Ceri H Davies; Roger D Traub; Miles A Whittington
Journal:  J Neurosci       Date:  2013-06-26       Impact factor: 6.167

3.  Combining independent component analysis and Granger causality to investigate brain network dynamics with fNIRS measurements.

Authors:  Zhen Yuan
Journal:  Biomed Opt Express       Date:  2013-10-25       Impact factor: 3.732

4.  Impaired cognitive flexibility following NMDAR-GluN2B deletion is associated with altered orbitofrontal-striatal function.

Authors:  Kristin Marquardt; Megan Josey; Johnny A Kenton; James F Cavanagh; Andrew Holmes; Jonathan L Brigman
Journal:  Neuroscience       Date:  2019-02-08       Impact factor: 3.590

5.  Granger causality analysis in neuroscience and neuroimaging.

Authors:  Anil K Seth; Adam B Barrett; Lionel Barnett
Journal:  J Neurosci       Date:  2015-02-25       Impact factor: 6.167

6.  Relationship between cortical state and spiking activity in the lateral geniculate nucleus of marmosets.

Authors:  Alexander N J Pietersen; Soon Keen Cheong; Brandon Munn; Pulin Gong; Paul R Martin; Samuel G Solomon
Journal:  J Physiol       Date:  2017-03-10       Impact factor: 5.182

7.  DynamicBC: a MATLAB toolbox for dynamic brain connectome analysis.

Authors:  Wei Liao; Guo-Rong Wu; Qiang Xu; Gong-Jun Ji; Zhiqiang Zhang; Yu-Feng Zang; Guangming Lu
Journal:  Brain Connect       Date:  2014-12

8.  Cholinergic neuromodulation controls directed temporal communication in neocortex in vitro.

Authors:  Anita K Roopun; Fiona E N Lebeau; James Rammell; Mark O Cunningham; Roger D Traub; Miles A Whittington
Journal:  Front Neural Circuits       Date:  2010-03-22       Impact factor: 3.492

9.  Directed coupling in local field potentials of macaque v4 during visual short-term memory revealed by multivariate autoregressive models.

Authors:  Gregor M Hoerzer; Stefanie Liebe; Alois Schloegl; Nikos K Logothetis; Gregor Rainer
Journal:  Front Comput Neurosci       Date:  2010-06-02       Impact factor: 2.380

10.  Unconscious errors enhance prefrontal-occipital oscillatory synchrony.

Authors:  Michael X Cohen; Simon van Gaal; K Richard Ridderinkhof; Victor A F Lamme
Journal:  Front Hum Neurosci       Date:  2009-11-24       Impact factor: 3.169

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