Literature DB >> 18597887

Origin of introns by 'intronization' of exonic sequences.

Manuel Irimia1, Jakob Lewin Rukov, David Penny, Jeppe Vinther, Jordi Garcia-Fernandez, Scott William Roy.   

Abstract

The mechanisms of spliceosomal intron creation have proved elusive. Here we describe a new mechanism: the recruitment of internal exonic sequences ('intronization') in Caenorhabditis species. The numbers of intronization events and introns gained by other mechanisms are similar, suggesting that intronization significantly contributes to recent intron creation in nematodes. Intronization is more common than the reverse process, loss of splicing of retained introns. Finally, these findings link alternative splicing with modern intron creation.

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Year:  2008        PMID: 18597887     DOI: 10.1016/j.tig.2008.05.007

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  43 in total

Review 1.  Intron creation and DNA repair.

Authors:  Hermann Ragg
Journal:  Cell Mol Life Sci       Date:  2010-09-19       Impact factor: 9.261

2.  Evaluation of models of the mechanisms underlying intron loss and gain in Aspergillus fungi.

Authors:  Lei-Ying Zhang; Yu-Fei Yang; Deng-Ke Niu
Journal:  J Mol Evol       Date:  2010-09-23       Impact factor: 2.395

Review 3.  Convergent evolution of twintron-like configurations: One is never enough.

Authors:  Mohamed Hafez; Georg Hausner
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

Review 4.  Endogenous mechanisms for the origins of spliceosomal introns.

Authors:  Francesco Catania; Xiang Gao; Douglas G Scofield
Journal:  J Hered       Date:  2009-07-27       Impact factor: 2.645

5.  Ubiquitous internal gene duplication and intron creation in eukaryotes.

Authors:  Xiang Gao; Michael Lynch
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-19       Impact factor: 11.205

6.  An overview of the introns-first theory.

Authors:  David Penny; Marc P Hoeppner; Anthony M Poole; Daniel C Jeffares
Journal:  J Mol Evol       Date:  2009-09-24       Impact factor: 2.395

7.  Extensive structural renovation of retrogenes in the evolution of the Populus genome.

Authors:  Zhenglin Zhu; Yong Zhang; Manyuan Long
Journal:  Plant Physiol       Date:  2009-09-29       Impact factor: 8.340

8.  Intronization, de-intronization and intron sliding are rare in Cryptococcus.

Authors:  Scott W Roy
Journal:  BMC Evol Biol       Date:  2009-08-07       Impact factor: 3.260

9.  Multiple gains of spliceosomal introns in a superfamily of vertebrate protease inhibitor genes.

Authors:  Hermann Ragg; Abhishek Kumar; Katharina Köster; Caterina Bentele; Yunjie Wang; Marc-André Frese; Natalie Prib; Olaf Krüger
Journal:  BMC Evol Biol       Date:  2009-08-22       Impact factor: 3.260

10.  Nonsense-mediated decay enables intron gain in Drosophila.

Authors:  Ashley Farlow; Eshwar Meduri; Marlies Dolezal; Liushuai Hua; Christian Schlötterer
Journal:  PLoS Genet       Date:  2010-01-22       Impact factor: 5.917

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